# CellAssign not working correctly

**URL:** https://discourse.scverse.org/t/cellassign-not-working-correctly/1596
**Category:** scvi-tools
**Tags:** cellassign
**Created:** [July 10, 2023, 5:41pm UTC](https://discourse.scverse.org/t/cellassign-not-working-correctly/1596 "2023-07-10T17:41:23Z")
**Posts on this page:** 1
**Page:** 1

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### Author: ![zacharyjxy](https://avatars.discourse-cdn.com/v4/letter/z/9d8465/32.png) [@zacharyjxy](https://discourse.scverse.org/u/zacharyjxy)
#### Post date: [July 10, 2023, 5:41pm UTC](https://discourse.scverse.org/t/cellassign-not-working-correctly/1596/1 "2023-07-10T17:41:23Z")

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Hi guys. I’m using a CellAssign to label cell types in a Human Choroid Plexus Sample based on the marker genes from a labelled mouse choroid plexus sample. I have managed to get CellAssign to run and label the cells in the human sample but I am missing an entire celltype in the final output. There is a huge chunk of cells labelled “other”, but I know for a fact that the cell type that is missing does appear in the human sample. I’m wondering how I can tweak CellAssign to fix this?