# Problem with PAGA graph plotting

**URL:** https://discourse.scverse.org/t/problem-with-paga-graph-plotting/1005
**Category:** scanpy
**Created:** [December 14, 2022, 2:02pm UTC](https://discourse.scverse.org/t/problem-with-paga-graph-plotting/1005 "2022-12-14T14:02:01Z")
**Posts on this page:** 1
**Page:** 1

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### Author: ![sebegui](https://avatars.discourse-cdn.com/v4/letter/s/ea5d25/32.png) [@sebegui](https://discourse.scverse.org/u/sebegui)
#### Post date: [December 14, 2022, 2:02pm UTC](https://discourse.scverse.org/t/problem-with-paga-graph-plotting/1005/1 "2022-12-14T14:02:01Z")

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Hi,

I am recently having some weird plotting when I compute PAGA graphs, and to test if it was a problem with my dataset I decided to run the full notebook from the Trajectory inference for hematopoiesis tutorial ([scanpy-tutorials/paga-paul15.ipynb at master · scverse/scanpy-tutorials · GitHub](https://github.com/scverse/scanpy-tutorials/blob/master/paga-paul15.ipynb)).

However, I get the same weird loking graphs when I run the pl.paga function. As an example:  
sc.pl.paga(adata, color=[‘louvain’, ‘Hba-a2’, ‘Elane’, ‘Irf8’])

 ![image](https://canada1.discourse-cdn.com/flex035/uploads/forum11/original/1X/414b33798cd2ff847776f1f4fda765aab7231bf9.png)

What could be happening here? Before they were looking just like in the tutorial.  
I updated scanpy and other packages to to the latest version, but the problem persists.