# totalVI tutorial of integration of CITE-seq datasets in R

**URL:** <https://discourse.scverse.org/t/totalvi-tutorial-of-integration-of-cite-seq-datasets-in-r/274>\
**Category:** scvi-tools\
**Tags:** integration, totalvi\
**Created:** [February 11, 2022, 4:29pm UTC](https://discourse.scverse.org/t/totalvi-tutorial-of-integration-of-cite-seq-datasets-in-r/274 "2022-02-11T16:29:41Z")\
**Posts on this page:** 3\
**Page:** 1

<div class="post-metadata">

**Author:** ![singlecellfan](https://yyz1.discourse-cdn.com/flex035/user_avatar/discourse.scverse.org/singlecellfan/32/137_2.png) [@singlecellfan](https://discourse.scverse.org/u/singlecellfan)\
**Post date:** [February 11, 2022, 4:29pm UTC](https://discourse.scverse.org/t/totalvi-tutorial-of-integration-of-cite-seq-datasets-in-r/274/1 "2022-02-11T16:29:41Z")

</div>

Hi,

I understand that there is a CITE-seq analysis in R tutorial and in principle other totalVI features can be used as well.

Is there a tutorial that shows integration of two CITE-seq datasets in R using totalVI?

---

<div class="post-metadata">

**Author:** ![adamgayoso](https://yyz1.discourse-cdn.com/flex035/user_avatar/discourse.scverse.org/adamgayoso/32/100_2.png) [@adamgayoso](https://discourse.scverse.org/u/adamgayoso)\
**Post date:** [February 11, 2022, 8:27pm UTC](https://discourse.scverse.org/t/totalvi-tutorial-of-integration-of-cite-seq-datasets-in-r/274/2 "2022-02-11T20:27:53Z")

</div>

Not exactly, but you could in principle combine the commands seen in this tutorial:

[https://docs.scvi-tools.org/en/stable/tutorials/notebooks/scvi\_in\_R.html#Integrating-datasets-with-scVI](https://docs.scvi-tools.org/en/stable/tutorials/notebooks/scvi_in_R.html#Integrating-datasets-with-scVI)

With the one in the python totalVI tutorial:

[https://docs.scvi-tools.org/en/stable/tutorials/notebooks/totalVI.html](https://docs.scvi-tools.org/en/stable/tutorials/notebooks/totalVI.html)

---

<div class="post-metadata">

**Author:** ![singlecellfan](https://yyz1.discourse-cdn.com/flex035/user_avatar/discourse.scverse.org/singlecellfan/32/137_2.png) [@singlecellfan](https://discourse.scverse.org/u/singlecellfan)\
**Post date:** [February 15, 2022, 4:45pm UTC](https://discourse.scverse.org/t/totalvi-tutorial-of-integration-of-cite-seq-datasets-in-r/274/3 "2022-02-15T16:45:42Z")

</div>

Okay, thanks! Will try that.