Topics tagged integration

Topic	Replies	Views	Activity
How to find HVG in Seurat-integrated data? scanpy integration	1	663	July 27, 2023
Bar plot using muon between scRNA-seq and scTCR-seq&scBCR-seq? scirpy integration	4	450	July 6, 2023
"ValueError: cannot specify integer `bins` when input data contains infinity" in multi sample data scanpy integration , multivi	6	5240	June 27, 2023
Can I aggregate images and data by shapes? spatialdata integration	3	429	June 22, 2023
COMPASS Installation tutorial - CPLEX Installation General integration , developer	0	359	June 19, 2023
Not sure if scvi is using my GPU or not scRNA-seq integration , scvi	7	1461	June 13, 2023
Validation loss lower than the training loss in scvi scvi-tools integration , scvi	7	1476	June 7, 2023
Scanorama embeddings on CellRank analysis cellrank integration	0	409	May 11, 2023
Dataset integration and analysis scvi-tools integration , cellassign , scvi , multivi , totalvi	3	1028	May 3, 2023
Choosing a Batch Key scvi-tools integration , scvi	2	1530	April 18, 2023
Muon function mofa.plot_factors muon integration	2	416	April 18, 2023
scRNA data integration General integration	0	410	April 6, 2023
Muon: multiple set of data comparative analysis muon integration	2	735	February 21, 2023
scVI access the model scvi-tools integration , scvi , developer	4	587	February 9, 2023
3 sets of CITE-Seq data, how to concatenate or make single file for further analysis? muon integration , scanvi , diff-exp , multivi , totalvi	0	529	February 7, 2023
Working with CellRanger Aggregated Data Help integration	1	697	February 4, 2023
Multiple training sets with scVI? scvi-tools integration , scvi	1	464	January 20, 2023
Is it possible to do second round integration via X_normalized_scVI normalized counts? scvi-tools integration , scvi	0	433	January 5, 2023
Anndata.concatenate() with two 10x multiome datasets? anndata integration , multivi	2	751	December 29, 2022
DE between conditions in a cluster scvi-tools integration , diff-exp , scvi	4	726	December 14, 2022
How to concatenate anndata properly? anndata scrna-seq , integration , scvi	2	9414	November 3, 2022
Integration of timelapse scRNA data scvi-tools integration , scvi	3	572	October 25, 2022
Best practices for processing/analyzing large scale scrna-seq datasets across multiple days scRNA-seq integration , scvi	2	1045	September 15, 2022
Advice regarding complex multimodal integration/analysis strategy General integration , scanvi , scvi , multivi , totalvi	0	480	July 28, 2022
ScArches-TotalVI reproducibility scArches integration , totalvi	15	1051	May 19, 2022
Batch Integration Parameter Tuning scvi-tools integration , gene-selection , scvi , modeling	1	755	March 2, 2022
totalVI tutorial of integration of CITE-seq datasets in R scvi-tools integration , totalvi	2	594	February 15, 2022
Seed labeling vs Integration and label transfer: highly variable genes scvi-tools integration , gene-selection , scanvi	2	647	January 20, 2022
Gene filtering prior to batch correction scRNA-seq scrna-seq , integration	2	920	July 9, 2021
Running TOTALVI data in which subset of cells do not have citeseq data scvi-tools integration , totalvi	8	761	March 25, 2021