Hello, I used scvi tools in R, trained a model to integrate multiple scRNA datasets and saved it as a .pt file. How can I load it back in R to continue the analysis?
seu_ann ← anndata::read_h5ad(“seu_ann.h5ad”)
scvi$settings$dl_num_workers = 4L
scvi$settings$num_threads = 60L
scvi$settings$seed = 813L
scvi$model$SCVI$setup_anndata(seu_ann)
model = scvi$model$SCVI(seu_ann)
model$train(model$train(early_stopping = T))
model$save(“model”, save_anndata = T)
Thank you!