Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1193	March 4, 2022
Resolvi differential test does not converge (?)	5	40	January 15, 2026
Data scaling for cytovi	2	23	January 15, 2026
Imputation/Denoise output scvi	1	13	January 15, 2026
Best practices for downstream analysis of Resolvi-corrected data	1	44	January 11, 2026
SCANVI Model Loading Issue: Partial Data and Workaround scanvi	1	9	January 11, 2026
Error in training resolvi model	5	49	January 5, 2026
Predict cell type with scANVI for spatial transcriptomics data (Xenium) integration , scanvi , scvi	7	173	December 28, 2025
Issue with scVI VAE reconstruction: High sensitivity to library size and poor rank preservation scvi	1	64	December 9, 2025
Issue with multiVI get_normalized_expression and get_normalized_accessibility multivi	5	62	December 7, 2025
Scvi 1.4.0. model.differential_expression outputs scvi	1	34	December 7, 2025
Corrected count for resolvi scvi	1	51	November 25, 2025
Question about complex experiment scrna-seq , integration , diff-exp , scvi , multivi	1	62	November 25, 2025
Loss_z1_weight and loss_z1_unweight in scANVI scanvi	3	501	November 25, 2025
Inquiry Regarding DRVI Model Compatibility with scANVI for Embedding Optimization? developer	1	45	November 25, 2025
Training not using the full GPU scvi	3	61	November 10, 2025
How to use totalVI denoised protein measurements totalvi	1	49	November 9, 2025
Question about get_normalized_expression computation scvi , totalvi	3	88	November 5, 2025
Batch key and categorical variables for get_normalized_expression()	2	108	November 4, 2025
Excluding Ig and ribosomal genes from HVG selection in scVI, best practice? integration , scvi , clustering	1	101	October 22, 2025
Potential bug in scvi.model.TOTALVI.setup_mudata	2	45	October 10, 2025
Is Gaussian mixture VAE implemented in scVI-tools?	3	69	September 25, 2025
Preprocess of scATAC use for peakVI or MultiVI	5	156	September 3, 2025
Using ResolVI’s Unsupervised Mode for Cell Annotation	7	244	August 26, 2025
Get_normalized_expression causes my kernel to disconnect scanvi	1	51	August 19, 2025
How to Correct for Intra-Organ Batch Effects Without Removing Inter-Organ Differences? integration	6	111	August 5, 2025
Conduct SCANVI after running SysVI on multi-platform data	3	61	August 3, 2025
Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)	15	363	July 31, 2025
Implementing Warmup to a component based on epoch scvi	2	67	July 31, 2025
Error when trying to use scvi.model.SCANVI.from_scvi_model	7	318	July 22, 2025