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2 150 March 4, 2022
Autoencoder gene expression reconstruction accuracy
0 5 May 19, 2022
Batch effect not entirely removed in PeakVI
peakvi
0 13 May 18, 2022
What model to use when integrating batches of scRNA-seq matrices containing >150,000 T and innate lymphoid cell (ILC) sub-populations
scvi
5 31 May 17, 2022
SCANVI: Label transfer from adult to embryonic data?
scanvi
1 14 May 17, 2022
Consistent results when using scvi.model.SCVI
scvi ,  developer
3 26 May 11, 2022
scvi.model.SCVI for DE gene anlaysis
1 53 May 8, 2022
Spatial datasets integration
scvi
0 24 May 5, 2022
Negative binomial regression on numerical variables
scvi
0 14 May 3, 2022
Semi supervised integration update
scanvi
2 26 May 3, 2022
What was the basis for parameter choices in tutorials?
tutorials ,  scanvi
1 74 April 29, 2022
TotalVI- ADT filtering and zero value markers
totalvi
0 28 April 26, 2022
TotalVI log normalization and non-negativity
totalvi
2 27 April 25, 2022
Unbalanced cell types and transform_batch
scvi
3 66 April 22, 2022
DE analysis between two batch-specific clusters
diff-exp ,  scvi
4 69 April 22, 2022
SCANVI: Label transfer from in vivo reference to in vitro model?
scanvi
2 35 April 21, 2022
Creating an atlas for online updating / architectural surgury using scANVI and partially labelled data
scanvi ,  scarches
1 36 April 14, 2022
Time point specific batch correction
5 72 April 3, 2022
All genes or highly variable genes?
gene-selection ,  scvi ,  totalvi
10 176 March 31, 2022
SCVI hyperparameter optimization
scvi
1 64 March 28, 2022
Loss_z1_weight and loss_z1_unweight in scANVI
scanvi
1 42 March 23, 2022
Sizes of tensors must match when reference mapping with SCANVI
1 48 March 23, 2022
Understanding scvi.module.VAEC
3 84 March 22, 2022
Resume training from model checkpoints
scanvi ,  scvi
1 42 March 18, 2022
Loading external CITE-seq anndata with argument `mask_protein_batches`?
totalvi
1 46 March 11, 2022
Train + Prediction Split
6 74 March 7, 2022
HVGs and model fit
gene-selection ,  scvi
4 130 March 6, 2022
Directly accessing scVI's decoder
scvi
6 237 March 3, 2022
Batch Integration Parameter Tuning
integration ,  gene-selection ,  scvi ,  modeling
1 90 March 2, 2022
Overriding functions from submodule
model-development
5 52 March 2, 2022