Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1037	March 4, 2022
[Usage clarification] Should the .obs in query and reference be exactly the same?	2	4	September 13, 2024
Trouble integrating my dataset into a reference dataset integration	5	17	September 13, 2024
How is the scArches scvi/scanvi pipeline different from the one on SCVI tutorials? scarches	0	3	September 13, 2024
Weird UMAP after running scVI	6	57	September 12, 2024
ZeroDivisionError using scvi-tools scatac-seq , scrna-seq	12	24	September 11, 2024
Macbook M1 M2 mps acceleration with scVI developer	7	1011	September 10, 2024
Embedding number for visualization integration , scvi	7	18	September 9, 2024
What to do when the query dataset has different genes from the reference?	4	27	September 4, 2024
scArches with multiple covariates scarches , integration , scvi	7	571	September 4, 2024
Scvi-tools and xenium scvi , integration	5	53	September 3, 2024
Error in MrVI differential abundance	0	8	September 2, 2024
Autotune on custom model class	4	8	August 30, 2024
Doublet removal: solo model train error scvi	13	31	August 29, 2024
Understanding `differential_expression()` and lvm-DE	3	7	August 28, 2024
Pre-defined validation data scvi	1	11	August 27, 2024
SCVI and SCANVI for label transfer how to assess accuracy? scanvi	3	47	August 20, 2024
Error when using scVI.model.train integration	2	33	August 19, 2024
Scvi - denoising single-cell/single-nucleus transcription data scvi	3	87	August 8, 2024
scVI integration set batch_key and poor Umap result scvi , integration , diff-exp	3	41	August 7, 2024
Is the output of `get_normalized_expression` batch-corrected or not? scvi , integration	2	43	August 5, 2024
Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI scanvi	4	30	August 1, 2024
MrVI input and interpretation	23	1011	July 31, 2024
Benchmarking with scib-metrics: Graph Connectivity as a batch correction metric integration	5	39	July 25, 2024
AdversarialTrainingPlan in _trainingplans.py	1	8	July 23, 2024
Different UMAPs for same dataset with scANVI scvi , scanvi	6	40	July 22, 2024
Differences in library sizes between reference and query	3	17	July 22, 2024
Integration with multiple categorical variable	1	12	July 22, 2024
Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix' scvi , integration	4	92	July 21, 2024
MrVI min cells per sample, cross tissue samples	1	24	July 20, 2024