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scvi-tools
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About the scvi-tools category
For questions about using scvi-tools.
2
150
March 4, 2022
Autoencoder gene expression reconstruction accuracy
0
5
May 19, 2022
Batch effect not entirely removed in PeakVI
peakvi
0
13
May 18, 2022
What model to use when integrating batches of scRNA-seq matrices containing >150,000 T and innate lymphoid cell (ILC) sub-populations
scvi
5
31
May 17, 2022
SCANVI: Label transfer from adult to embryonic data?
scanvi
1
14
May 17, 2022
Consistent results when using scvi.model.SCVI
scvi
,
developer
3
26
May 11, 2022
scvi.model.SCVI for DE gene anlaysis
1
53
May 8, 2022
Spatial datasets integration
scvi
0
24
May 5, 2022
Negative binomial regression on numerical variables
scvi
0
14
May 3, 2022
Semi supervised integration update
scanvi
2
26
May 3, 2022
What was the basis for parameter choices in tutorials?
tutorials
,
scanvi
1
74
April 29, 2022
TotalVI- ADT filtering and zero value markers
totalvi
0
28
April 26, 2022
TotalVI log normalization and non-negativity
totalvi
2
27
April 25, 2022
Unbalanced cell types and transform_batch
scvi
3
66
April 22, 2022
DE analysis between two batch-specific clusters
diff-exp
,
scvi
4
69
April 22, 2022
SCANVI: Label transfer from in vivo reference to in vitro model?
scanvi
2
35
April 21, 2022
Creating an atlas for online updating / architectural surgury using scANVI and partially labelled data
scanvi
,
scarches
1
36
April 14, 2022
Time point specific batch correction
5
72
April 3, 2022
All genes or highly variable genes?
gene-selection
,
scvi
,
totalvi
10
176
March 31, 2022
SCVI hyperparameter optimization
scvi
1
64
March 28, 2022
Loss_z1_weight and loss_z1_unweight in scANVI
scanvi
1
42
March 23, 2022
Sizes of tensors must match when reference mapping with SCANVI
1
48
March 23, 2022
Understanding scvi.module.VAEC
3
84
March 22, 2022
Resume training from model checkpoints
scanvi
,
scvi
1
42
March 18, 2022
Loading external CITE-seq anndata with argument `mask_protein_batches`?
totalvi
1
46
March 11, 2022
Train + Prediction Split
6
74
March 7, 2022
HVGs and model fit
gene-selection
,
scvi
4
130
March 6, 2022
Directly accessing scVI's decoder
scvi
6
237
March 3, 2022
Batch Integration Parameter Tuning
integration
,
gene-selection
,
scvi
,
modeling
1
90
March 2, 2022
Overriding functions from submodule
model-development
5
52
March 2, 2022
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