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scvi-tools
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About the scvi-tools category
For questions about using scvi-tools.
2
1076
March 4, 2022
What training datasets are used in the scVI pretrained model (version 2024-07-01)?
integration
,
scvi
2
3
December 23, 2024
Suggestions for training on xenium spatial transcriptomics dataset
0
6
December 21, 2024
Issue with model.train() in scVI - Training Stuck at 0%
scvi
1
13
December 15, 2024
Train scVI on a sampled dataset
8
58
December 6, 2024
Error loading previously saved scVI model after updating packages / cloud environment
6
314
December 5, 2024
CUDA is available but Training scVI models is too slow
scvi
4
16
December 4, 2024
scVI: effect of unbalanced number of cells in batches
scvi
,
integration
1
22
November 27, 2024
Zero value with scvi normalisation
scvi
1
14
November 27, 2024
Getting the parameters and their names of scVI
scvi
3
370
November 27, 2024
Scvi-tools: different DEGs when comparing same data
diff-exp
,
scvi
,
integration
2
22
November 19, 2024
Error training MrVI: Backend 'cuda' failed to initialize
2
27
November 18, 2024
Integrating different tissues with scVI
integration
,
scvi
3
72
November 15, 2024
Integration with or without covariate
1
35
November 11, 2024
scVI 21618 problem
scvi
,
integration
5
208
November 7, 2024
Iteration consumes memory
scvi
5
37
November 7, 2024
Inconsistency of scvi/SOLO in predicting doublets?
5
28
November 7, 2024
Why totalvi can be used as denoising data?
scvi
1
18
November 7, 2024
Documentation for training with multiple GPUs
4
168
November 6, 2024
New scvi-tools version using SOLO returns probabilities, how to return logits like in version 1.1.2
solo
,
scvi
7
90
July 2, 2024
Autotune failed due to "h5py objects cannot be pickled"
4
52
October 23, 2024
Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI
scanvi
8
85
October 17, 2024
SCANVI inferred cell types don't make sense
scanvi
1
39
October 17, 2024
Using low precision matrix multiplication to boost performance
6
88
October 17, 2024
Model Training got only 2 epochs
integration
,
scvi
4
49
October 14, 2024
Trouble integrating my dataset into a reference dataset
integration
16
135
October 11, 2024
Is it possible to add extra covariate categories to a trained SCVI model?
scrna-seq
,
scvi
,
scanvi
,
integration
3
48
October 4, 2024
Error in MrVI differential abundance
1
27
September 27, 2024
Scale for predicted vs observed plot in SCVI-SCANVI mapping?
2
26
September 25, 2024
Scvi-tools and xenium
scvi
,
integration
6
139
September 25, 2024
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