Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1027	March 4, 2022
MrVI input and interpretation	21	959	July 25, 2024
Benchmarking with scib-metrics: Graph Connectivity as a batch correction metric integration	5	25	July 25, 2024
Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI scanvi	1	5	July 25, 2024
AdversarialTrainingPlan in _trainingplans.py	1	5	July 23, 2024
Different UMAPs for same dataset with scANVI scvi , scanvi	6	25	July 22, 2024
Differences in library sizes between reference and query	3	11	July 22, 2024
Integration with multiple categorical variable	1	7	July 22, 2024
Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix' scvi , integration	4	24	July 21, 2024
MrVI min cells per sample, cross tissue samples	1	14	July 20, 2024
Multithreading error	1	19	July 16, 2024
Error with DefaultAssay in R when Integrating Data Using scvi-tools integration , scvi	4	61	July 16, 2024
Error when trying to use scvi.model.SCANVI.from_scvi_model	2	93	July 12, 2024
Any suggestions for speeding up model training (vae and solo) on M2 mac	1	41	July 8, 2024
Scvi - denoising single-cell/single-nucleus transcription data scvi	1	53	July 5, 2024
Recommendation for transform_batch / categorical_covariate_keys to obtain "batch corrected" counts integration	1	56	July 3, 2024
New scvi-tools version using SOLO returns probabilities, how to return logits like in version 1.1.2 solo , scvi	7	59	July 2, 2024
N_samples ( refers to Monte Carlo sampling for each cell) setting in totalVI totalvi	1	51	June 28, 2024
Failing to import SCVI-tools modules: has AnnDatasetFromAnnData been replaced? totalvi	2	34	June 27, 2024
Error in py_call_impl(callable, call_args$unnamed, call_args$named)	0	60	June 24, 2024
The output of scANVI integration , scanvi , scvi	2	101	June 19, 2024
Differential expression with scvi - batch correction? scvi	1	93	June 19, 2024
Question about differential expression and the batch_correction usage diff-exp , scvi	0	106	June 7, 2024
Best way to rank genes for GSEA analysis diff-exp , scvi	3	660	June 5, 2024
scVI 21618 problem scvi , integration	2	142	June 5, 2024
Issues running the updated version of MrVI integration	1	138	June 3, 2024
mrVI hyperparameter tunning	3	285	June 3, 2024
Documentation for training with multiple GPUs	2	74	May 31, 2024
Error loading previously saved scVI model after updating packages / cloud environment	5	111	May 31, 2024
SCVI tools with large datasets	3	406	May 31, 2024