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scvi-tools
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About the scvi-tools category
For questions about using scvi-tools.
0
1227
October 19, 2020
mrVI and groupby=None
2
35
June 25, 2026
Choosing number of latent variables
3
59
May 26, 2026
Getting normalized expression
integration
,
diff-exp
,
scvi
13
138
May 13, 2026
Using curated marker genes together with HVGs for scVI feature selection in adult skeletal muscle snRNA-seq
1
43
May 12, 2026
Using ResolVI’s Unsupervised Mode for Cell Annotation
9
563
May 7, 2026
Integration challenges in a multi-dataset single cell type maturation atlas
scvi
2
55
April 24, 2026
MrVI input and interpretation
28
1947
April 23, 2026
ResolVI Corrected Counts for Segmented Visium HD Data
scvi
3
95
April 23, 2026
Correct way to run SOLO for doublet detection
scvi
,
solo
,
doublets
2
60
April 23, 2026
Mapping 10X Xenium 5k data to scRNA-seq reference
integration
3
87
April 23, 2026
PeakVI preprocessing for multi-timepoint scATAC-seq when peak coordinates differ slightly across samples
peakvi
2
39
April 23, 2026
MRVI Jax Error "Invalid component distribution"
integration
3
41
April 13, 2026
CPU memory usage in multi-GPU training
6
92
April 4, 2026
Unstable result
scvi
2
358
March 27, 2026
Macbook M1 M2 mps acceleration with scVI
developer
10
2211
March 3, 2026
Regarding resolvi reproducibility scripts and fov for xenium
scvi
2
76
March 2, 2026
Is older advice for estimating optimal number of epochs for model training of scVI still recommended?
scrna-seq
,
scvi
6
138
March 1, 2026
Ablating latent variables in LinearSCVI
5
197
February 24, 2026
Scvi-tools not allowing me to download cellxgene census data
scvi
,
scvi-tools
2
49
January 28, 2026
Does Decipher require cell type annotation
6
79
January 28, 2026
Best practices for downstream analysis of Resolvi-corrected data
2
264
January 27, 2026
Resolvi differential test does not converge (?)
5
122
January 15, 2026
Data scaling for cytovi
2
71
January 15, 2026
Imputation/Denoise output
scvi
1
62
January 15, 2026
SCANVI Model Loading Issue: Partial Data and Workaround
scanvi
1
44
January 11, 2026
Error in training resolvi model
5
120
January 5, 2026
Predict cell type with scANVI for spatial transcriptomics data (Xenium)
integration
,
scanvi
,
scvi
7
500
December 28, 2025
Issue with scVI VAE reconstruction: High sensitivity to library size and poor rank preservation
scvi
1
128
December 9, 2025
Issue with multiVI get_normalized_expression and get_normalized_accessibility
multivi
5
135
December 7, 2025
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