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scvi-tools
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About the scvi-tools category
For questions about using scvi-tools.
2
1091
March 4, 2022
Question about interpreting the DEGs associated with disease changes using MrVI
2
16
February 11, 2025
Ablating latent variables in LinearSCVI
3
16
February 6, 2025
TotalVI not fully integrating CITEseq cells with GEX and missing protein values
integration
,
totalvi
1
14
February 6, 2025
Differential gene expression shows very low raw_means
2
21
January 30, 2025
The mean of the the scVI ZINB model distribution (related to supplementary note 3)
scvi
4
28
January 29, 2025
How to appropriately transfer annotations from anndata to seurat
anndata
2
51
January 24, 2025
Best practice for handling custom points during SCVI training
4
35
January 24, 2025
Workflow to integrate dataset from two different species
1
47
January 21, 2025
Scvi embedding from Census API by CellxGene
1
16
January 20, 2025
Model cannot be initialized and return error
6
48
January 15, 2025
Error loading someone else's SCVI model: no such file (attr.pkl)
scvi
1
19
January 13, 2025
Impact of batch on TotalVI results
totalvi
1
42
January 5, 2025
Differential expression analysis
4
624
January 5, 2025
What training datasets are used in the scVI pretrained model (version 2024-07-01)?
integration
,
scvi
2
40
December 23, 2024
Suggestions for training on xenium spatial transcriptomics dataset
0
37
December 21, 2024
Issue with model.train() in scVI - Training Stuck at 0%
scvi
1
37
December 15, 2024
Train scVI on a sampled dataset
8
76
December 6, 2024
Error loading previously saved scVI model after updating packages / cloud environment
6
380
December 5, 2024
CUDA is available but Training scVI models is too slow
scvi
4
53
December 4, 2024
scVI: effect of unbalanced number of cells in batches
scvi
,
integration
1
31
November 27, 2024
Zero value with scvi normalisation
scvi
1
22
November 27, 2024
Getting the parameters and their names of scVI
scvi
3
384
November 27, 2024
Scvi-tools: different DEGs when comparing same data
diff-exp
,
scvi
,
integration
2
41
November 19, 2024
Error training MrVI: Backend 'cuda' failed to initialize
2
51
November 18, 2024
Integrating different tissues with scVI
integration
,
scvi
3
102
November 15, 2024
Integration with or without covariate
1
48
November 11, 2024
scVI 21618 problem
scvi
,
integration
5
217
November 7, 2024
Iteration consumes memory
scvi
5
45
November 7, 2024
Inconsistency of scvi/SOLO in predicting doublets?
5
32
November 7, 2024
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