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scvi-tools
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About the scvi-tools category
For questions about using scvi-tools.
2
816
March 4, 2022
Issues running the updated version of MrVI
integration
0
11
March 18, 2024
Remove outliers from trained scVI model
integration
,
scvi
0
22
March 16, 2024
Questions about reference mapping
0
20
March 14, 2024
Extracting Normalized Expression from Trained Model on Variable Subset
scvi
2
23
March 14, 2024
Interpreting model history curves
peakvi
0
19
March 13, 2024
Access to each training example's original index in the input Anndata object
scrna-seq
,
integration
,
scvi
,
developer
0
23
March 12, 2024
How to interpret the latent space in scVI
scvi
6
254
March 5, 2024
Explicit Access to the Training Set During scVI Training
integration
,
scvi
0
29
March 4, 2024
Unexpected Effect of Augmentations on scVI Batch Integration
integration
,
scvi
0
188
March 2, 2024
Scvi performance on nvidia h100 vs a100
4
69
March 1, 2024
Help on MultiVI for data modality
totalvi
0
35
February 29, 2024
Incorporating augmentations (per batch) for scVI training
scvi
11
151
February 28, 2024
Loading model.pt in R
0
38
February 21, 2024
Reloading saved model gives different results
scvi
7
117
February 20, 2024
Clustering with X_scVI after removing doublets
0
42
February 20, 2024
Preserving biological variability in scVI sample integration
integration
,
scvi
4
120
February 16, 2024
Macbook M1 M2 mps acceleration with scVI
developer
4
226
February 16, 2024
Trouble with scvi environment from reticulate in R to run seurat pipeline
1
88
February 16, 2024
How to compute the integration metrics
multivi
1
54
February 16, 2024
Error when training model on M3 Max MPS
5
419
February 16, 2024
Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
integration
,
scvi
,
developer
1
82
February 16, 2024
Running totalVI by batch
1
55
February 16, 2024
Failure to remove a batch_key/ effect of number of LVs
integration
,
scvi
6
149
February 9, 2024
Scvi and subtyping
integration
,
scvi
1
109
February 9, 2024
SCVI tools with large datasets
2
154
February 9, 2024
Computing neighbors from X_scANVI representation
scanvi
,
scvi
0
60
February 4, 2024
How to save intermediate checkpoints?
3
266
February 3, 2024
Using a model with categorical_covariate_key instead of batch_key
2
136
February 1, 2024
GIMVI, label specification for single cell and spatial data
0
56
January 28, 2024
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