Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1144	March 4, 2022
Get_normalized_expression causes my kernel to disconnect scanvi	1	13	August 19, 2025
Using ResolVI’s Unsupervised Mode for Cell Annotation	6	43	August 7, 2025
How to Correct for Intra-Organ Batch Effects Without Removing Inter-Organ Differences? integration	6	35	August 5, 2025
Conduct SCANVI after running SysVI on multi-platform data	3	30	August 3, 2025
Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)	15	221	July 31, 2025
Implementing Warmup to a component based on epoch scvi	2	25	July 31, 2025
Error when trying to use scvi.model.SCANVI.from_scvi_model	7	247	July 22, 2025
Problems with Bayes factors and LFC changes using model.differential_expression() diff-exp	8	183	July 9, 2025
Wrong log-fold change estimation? diff-exp	3	53	July 9, 2025
Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression totalvi	2	40	July 10, 2025
Does MultiVI support using tile matrix directly instead of peak calling for ATAC input? multivi , scvi	2	39	July 9, 2025
The best practice for detecting differential gene expression between 2 types of samples	4	907	July 9, 2025
Documentation for training with multiple GPUs	5	321	July 9, 2025
Shared cell types not mixing when integrating datasets from different species scvi , integration	4	78	June 19, 2025
Preprocess of scATAC use for peakVI or MultiVI	2	54	June 19, 2025
SMART-seq and MARS-seq pipelines integration	1	42	June 19, 2025
Workflow advice for totalVI in CITE-seq Multiplexed data totalvi	3	56	June 19, 2025
Domain adaptation to pre-train batch correction model using paired data developer , integration , scvi	12	117	May 27, 2025
Amortized LDA Topic Modeling - picking the right number of topics	8	114	June 4, 2025
scVI batch correction clusters all cells from sample in a circle (potential artifact) integration , scvi	14	105	June 3, 2025
Macbook M1 M2 mps acceleration with scVI developer	9	1667	May 30, 2025
Help on MultiVI for data modality totalvi	1	194	May 16, 2025
Protocol for model optimization (currently focused on MultiVI) multivi	3	559	May 14, 2025
How to interpret reconstruction loss increase but elbo loss decrease on trained scvi and scanvi models	1	72	May 11, 2025
Nan values in the latent of scanvi_query scanvi	1	19	April 23, 2025
Modify gene identifiers stored in existing scVI model	1	33	April 20, 2025
Anndata Manager Store	11	67	April 20, 2025
Scvi package can't be installed into google colab? scvi	6	48	April 20, 2025
Is the scVI model applicable to bulk RNA-seq data from cell lines? scvi	1	69	April 16, 2025