Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1188	March 4, 2022
Predict cell type with scANVI for spatial transcriptomics data (Xenium) integration , scanvi , scvi	7	110	December 28, 2025
Error in training resolvi model	2	13	December 28, 2025
Issue with scVI VAE reconstruction: High sensitivity to library size and poor rank preservation scvi	1	43	December 9, 2025
Issue with multiVI get_normalized_expression and get_normalized_accessibility multivi	5	41	December 7, 2025
Scvi 1.4.0. model.differential_expression outputs scvi	1	18	December 7, 2025
Corrected count for resolvi scvi	1	37	November 25, 2025
Question about complex experiment scrna-seq , integration , diff-exp , scvi , multivi	1	46	November 25, 2025
Loss_z1_weight and loss_z1_unweight in scANVI scanvi	3	492	November 25, 2025
Inquiry Regarding DRVI Model Compatibility with scANVI for Embedding Optimization? developer	1	37	November 25, 2025
Training not using the full GPU scvi	3	56	November 10, 2025
How to use totalVI denoised protein measurements totalvi	1	41	November 9, 2025
Question about get_normalized_expression computation scvi , totalvi	3	74	November 5, 2025
Batch key and categorical variables for get_normalized_expression()	2	88	November 4, 2025
Excluding Ig and ribosomal genes from HVG selection in scVI, best practice? integration , scvi , clustering	1	87	October 22, 2025
Potential bug in scvi.model.TOTALVI.setup_mudata	2	40	October 10, 2025
Is Gaussian mixture VAE implemented in scVI-tools?	3	60	September 25, 2025
Preprocess of scATAC use for peakVI or MultiVI	5	147	September 3, 2025
Using ResolVI’s Unsupervised Mode for Cell Annotation	7	216	August 26, 2025
Get_normalized_expression causes my kernel to disconnect scanvi	1	47	August 19, 2025
How to Correct for Intra-Organ Batch Effects Without Removing Inter-Organ Differences? integration	6	93	August 5, 2025
Conduct SCANVI after running SysVI on multi-platform data	3	54	August 3, 2025
Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)	15	327	July 31, 2025
Implementing Warmup to a component based on epoch scvi	2	61	July 31, 2025
Error when trying to use scvi.model.SCANVI.from_scvi_model	7	303	July 22, 2025
Problems with Bayes factors and LFC changes using model.differential_expression() diff-exp	8	283	July 9, 2025
Wrong log-fold change estimation? diff-exp	3	81	July 9, 2025
Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression totalvi	2	85	July 10, 2025
Does MultiVI support using tile matrix directly instead of peak calling for ATAC input? scvi , multivi	2	72	July 9, 2025
The best practice for detecting differential gene expression between 2 types of samples	4	1051	July 9, 2025