scverse
Help
scvi-tools
Topic
Replies
Views
Activity
About the scvi-tools category
For questions about using scvi-tools.
2
361
March 4, 2022
Hyperparameter optimization of SCVI model using the autotune package
3
48
March 28, 2023
scANVI relables known cells with known types incorrectly
scanvi
12
698
March 28, 2023
About model.differential analysis
diff-exp
,
scvi
0
19
March 26, 2023
Tuning/setting scvi.model.SCVI parameters
scvi
9
361
March 25, 2023
DE analysis between two batch-specific clusters
diff-exp
,
scvi
9
278
March 24, 2023
Batch correction in reconstructed gene space
4
45
March 24, 2023
Choosing a Dispersion Option in scvi Model Training
1
66
March 23, 2023
Make another probabilistic model in scvi-tools
developer
2
91
March 22, 2023
GPU available but not using
7
231
March 17, 2023
Building machine learning model for lectin array
0
30
March 17, 2023
How to specify batch correction for 7 samples from two bacthes?
scvi
2
72
March 15, 2023
Questions about running differential expression
9
170
March 14, 2023
Silence verbose logging during scVI training
2
63
March 12, 2023
DestVI gene imputation comparison between slides
0
46
March 11, 2023
totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data
totalvi
,
multivi
,
modeling
3
265
March 9, 2023
Scvi importing problems
3
69
March 9, 2023
Don't extend labels for query data
scanvi
1
44
March 6, 2023
MrVI input and interpretation
7
206
March 2, 2023
Mini-batching error after registering MuData .varm field with custom scvi-tools model
scvi
,
developer
1
48
March 1, 2023
Model which can work on binary data
1
54
February 27, 2023
How to interpret vae.train() progress bar?
scvi
1
61
February 23, 2023
Which values do you use to visualise gene expression?
3
191
February 21, 2023
Kernel dying when using scvi to train a model (m1 mac)
0
57
February 21, 2023
Scib_metrics run time
5
61
February 19, 2023
Minimum number of cells for scVI?
scvi
2
71
February 15, 2023
Generate cell expression from latent space directly
scvi
0
67
February 12, 2023
scVI access the model
integration
,
scvi
,
developer
4
89
February 9, 2023
Scvi-toools based model does not log metrics on every step
3
66
February 5, 2023
Unstable result
scvi
0
72
February 1, 2023
next page →