Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1094	March 4, 2022
Differential Expression and Batch Correction scvi	1	37	February 20, 2025
Add new data to existing integration	1	9	February 20, 2025
SOLO/scVI .train() error related to batch_size? scvi	6	1177	February 20, 2025
Question about interpreting the DEGs associated with disease changes using MrVI	2	27	February 11, 2025
Ablating latent variables in LinearSCVI	3	27	February 6, 2025
TotalVI not fully integrating CITEseq cells with GEX and missing protein values integration , totalvi	1	17	February 6, 2025
Differential gene expression shows very low raw_means	2	25	January 30, 2025
The mean of the the scVI ZINB model distribution (related to supplementary note 3) scvi	4	29	January 29, 2025
How to appropriately transfer annotations from anndata to seurat anndata	2	63	January 24, 2025
Best practice for handling custom points during SCVI training	4	43	January 24, 2025
Workflow to integrate dataset from two different species	1	53	January 21, 2025
Scvi embedding from Census API by CellxGene	1	18	January 20, 2025
Model cannot be initialized and return error	6	50	January 15, 2025
Error loading someone else's SCVI model: no such file (attr.pkl) scvi	1	20	January 13, 2025
Impact of batch on TotalVI results totalvi	1	43	January 5, 2025
Differential expression analysis	4	639	January 5, 2025
What training datasets are used in the scVI pretrained model (version 2024-07-01)? integration , scvi	2	44	December 23, 2024
Suggestions for training on xenium spatial transcriptomics dataset	0	43	December 21, 2024
Issue with model.train() in scVI - Training Stuck at 0% scvi	1	40	December 15, 2024
Train scVI on a sampled dataset	8	77	December 6, 2024
Error loading previously saved scVI model after updating packages / cloud environment	6	392	December 5, 2024
CUDA is available but Training scVI models is too slow scvi	4	60	December 4, 2024
scVI: effect of unbalanced number of cells in batches scvi , integration	1	34	November 27, 2024
Zero value with scvi normalisation scvi	1	22	November 27, 2024
Getting the parameters and their names of scVI scvi	3	384	November 27, 2024
Scvi-tools: different DEGs when comparing same data diff-exp , scvi , integration	2	44	November 19, 2024
Error training MrVI: Backend 'cuda' failed to initialize	2	54	November 18, 2024
Integrating different tissues with scVI integration , scvi	3	105	November 15, 2024
Integration with or without covariate	1	50	November 11, 2024