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scvi-tools
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About the scvi-tools category
For questions about using scvi-tools.
2
1037
March 4, 2022
[Usage clarification] Should the .obs in query and reference be exactly the same?
2
4
September 13, 2024
Trouble integrating my dataset into a reference dataset
integration
5
17
September 13, 2024
How is the scArches scvi/scanvi pipeline different from the one on SCVI tutorials?
scarches
0
3
September 13, 2024
Weird UMAP after running scVI
6
57
September 12, 2024
ZeroDivisionError using scvi-tools
scatac-seq
,
scrna-seq
12
24
September 11, 2024
Macbook M1 M2 mps acceleration with scVI
developer
7
1011
September 10, 2024
Embedding number for visualization
integration
,
scvi
7
18
September 9, 2024
What to do when the query dataset has different genes from the reference?
4
27
September 4, 2024
scArches with multiple covariates
scarches
,
integration
,
scvi
7
571
September 4, 2024
Scvi-tools and xenium
scvi
,
integration
5
53
September 3, 2024
Error in MrVI differential abundance
0
8
September 2, 2024
Autotune on custom model class
4
8
August 30, 2024
Doublet removal: solo model train error
scvi
13
31
August 29, 2024
Understanding `differential_expression()` and lvm-DE
3
7
August 28, 2024
Pre-defined validation data
scvi
1
11
August 27, 2024
SCVI and SCANVI for label transfer how to assess accuracy?
scanvi
3
47
August 20, 2024
Error when using scVI.model.train
integration
2
33
August 19, 2024
Scvi - denoising single-cell/single-nucleus transcription data
scvi
3
87
August 8, 2024
scVI integration set batch_key and poor Umap result
scvi
,
integration
,
diff-exp
3
41
August 7, 2024
Is the output of `get_normalized_expression` batch-corrected or not?
scvi
,
integration
2
43
August 5, 2024
Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI
scanvi
4
30
August 1, 2024
MrVI input and interpretation
23
1011
July 31, 2024
Benchmarking with scib-metrics: Graph Connectivity as a batch correction metric
integration
5
39
July 25, 2024
AdversarialTrainingPlan in _trainingplans.py
1
8
July 23, 2024
Different UMAPs for same dataset with scANVI
scvi
,
scanvi
6
40
July 22, 2024
Differences in library sizes between reference and query
3
17
July 22, 2024
Integration with multiple categorical variable
1
12
July 22, 2024
Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix'
scvi
,
integration
4
92
July 21, 2024
MrVI min cells per sample, cross tissue samples
1
24
July 20, 2024
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