Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	573	March 4, 2022
Re-integration after subseting cluster integration , scvi	2	48	September 26, 2023
Increase scVI integration speed integration	4	44	September 26, 2023
Sequential scArches integration , scvi , scarches	0	25	September 24, 2023
scVI integration using two batch keys	4	67	September 15, 2023
How to save intermediate checkpoints?	1	102	September 14, 2023
How to install solo-sc or use hashsolo from scvi?	4	117	September 11, 2023
Get var_names used for training SCVI model scvi	0	36	September 11, 2023
scVI reproducibility seed issue scvi	2	92	September 7, 2023
Problems importing scvi [Windows] scvi	22	2577	August 29, 2023
TypeError when trying to set up scvi.model.TOTALVI() totalvi	2	71	August 29, 2023
Loading an scVI model from a pytorch lightning checkpoint scvi	3	135	August 29, 2023
Increase number of CPU cores for vae.train() in scvi? scvi , totalvi	3	87	August 28, 2023
Different DEG results after loading .h5ad diff-exp	0	56	August 19, 2023
Differential expression analysis	2	146	August 17, 2023
What is the best way to extract a "full" batch effect corrected count matrix from scVI model? scvi	4	907	August 16, 2023
DestVI Tensor Nan Error scvi , destvi	6	622	August 4, 2023
MultiVI error on only paired data	0	56	August 4, 2023
Sparse matrix error using totalVI integration integration	1	71	August 4, 2023
How to setseed in R? integration , scvi	0	46	July 31, 2023
Label transfer with SCVI-SCANVI pipeline changes (predicts wrong) labels in ref data scanvi , scvi	8	290	July 31, 2023
Could not find function "scvi.model.SCVI.setup_anndata" scrna-seq , integration , scvi	0	101	July 29, 2023
Perform SCANVI in R/Reticulate	0	71	July 28, 2023
Import scvi error scvi	0	73	July 25, 2023
scGen generate irreproducible output	6	114	July 24, 2023
Questions about GimVI	3	88	July 17, 2023
CellAssign not working correctly cellassign	0	76	July 10, 2023
SOLO/scVI .train() error related to batch_size? scvi	2	166	July 8, 2023
Supervised training with scanvi does not converge, any clue why? scanvi	0	98	July 4, 2023
Generate cell expression from latent space directly scvi	2	227	June 26, 2023