Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	0	1254	October 19, 2020
Can scVI take as input SCT-normalized data? integration , scvi	2	85	September 8, 2026
How to install solo-sc or use hashsolo from scvi?	5	942	August 18, 2026
Allowed downstream analysis with get_normalized_expression? integration , scvi	6	197	July 30, 2026
Within-individual DE/DA with MrVI	1	44	July 15, 2026
SCVI view_anndata_setup causes AttributeError with rich.pretty integration , scvi	1	54	July 8, 2026
mrVI and groupby=None	2	74	June 25, 2026
Choosing number of latent variables	3	105	May 26, 2026
Getting normalized expression integration , diff-exp , scvi	13	315	May 13, 2026
Using curated marker genes together with HVGs for scVI feature selection in adult skeletal muscle snRNA-seq	1	72	May 12, 2026
Using ResolVI’s Unsupervised Mode for Cell Annotation	9	712	May 7, 2026
Integration challenges in a multi-dataset single cell type maturation atlas scvi	2	89	April 24, 2026
MrVI input and interpretation	28	2192	April 23, 2026
ResolVI Corrected Counts for Segmented Visium HD Data scvi	3	181	April 23, 2026
Correct way to run SOLO for doublet detection scvi , solo , doublets	2	118	April 23, 2026
Mapping 10X Xenium 5k data to scRNA-seq reference integration	3	186	April 23, 2026
PeakVI preprocessing for multi-timepoint scATAC-seq when peak coordinates differ slightly across samples peakvi	2	72	April 23, 2026
MRVI Jax Error "Invalid component distribution" integration	3	86	April 13, 2026
CPU memory usage in multi-GPU training	6	185	April 4, 2026
Unstable result scvi	2	382	March 27, 2026
Macbook M1 M2 mps acceleration with scVI developer	10	2336	March 3, 2026
Regarding resolvi reproducibility scripts and fov for xenium scvi	2	121	March 2, 2026
Is older advice for estimating optimal number of epochs for model training of scVI still recommended? scrna-seq , scvi	6	251	March 1, 2026
Ablating latent variables in LinearSCVI	5	241	February 24, 2026
Scvi-tools not allowing me to download cellxgene census data scvi , scvi-tools	2	88	January 28, 2026
Does Decipher require cell type annotation	6	154	January 28, 2026
Best practices for downstream analysis of Resolvi-corrected data	2	354	January 27, 2026
Resolvi differential test does not converge (?)	5	199	January 15, 2026
Data scaling for cytovi	2	111	January 15, 2026
Imputation/Denoise output scvi	1	100	January 15, 2026