Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1200	March 4, 2022
Is older advice for estimating optimal number of epochs for model training of scVI still recommended? scrna-seq , scvi	5	24	February 27, 2026
Regarding resolvi reproducibility scripts and fov for xenium scvi	1	14	February 25, 2026
Ablating latent variables in LinearSCVI	5	141	February 24, 2026
Scvi-tools not allowing me to download cellxgene census data scvi , scvi-tools	2	22	January 28, 2026
Does Decipher require cell type annotation	6	32	January 28, 2026
Best practices for downstream analysis of Resolvi-corrected data	2	108	January 27, 2026
Resolvi differential test does not converge (?)	5	55	January 15, 2026
Data scaling for cytovi	2	34	January 15, 2026
Imputation/Denoise output scvi	1	25	January 15, 2026
SCANVI Model Loading Issue: Partial Data and Workaround scanvi	1	21	January 11, 2026
Error in training resolvi model	5	82	January 5, 2026
Predict cell type with scANVI for spatial transcriptomics data (Xenium) integration , scanvi , scvi	7	252	December 28, 2025
Issue with scVI VAE reconstruction: High sensitivity to library size and poor rank preservation scvi	1	83	December 9, 2025
Issue with multiVI get_normalized_expression and get_normalized_accessibility multivi	5	92	December 7, 2025
Scvi 1.4.0. model.differential_expression outputs scvi	1	45	December 7, 2025
Corrected count for resolvi scvi	1	70	November 25, 2025
Question about complex experiment scrna-seq , integration , diff-exp , scvi , multivi	1	72	November 25, 2025
Loss_z1_weight and loss_z1_unweight in scANVI scanvi	3	510	November 25, 2025
Inquiry Regarding DRVI Model Compatibility with scANVI for Embedding Optimization? developer	1	48	November 25, 2025
Training not using the full GPU scvi	3	74	November 10, 2025
How to use totalVI denoised protein measurements totalvi	1	56	November 9, 2025
Question about get_normalized_expression computation scvi , totalvi	3	111	November 5, 2025
Batch key and categorical variables for get_normalized_expression()	2	126	November 4, 2025
Excluding Ig and ribosomal genes from HVG selection in scVI, best practice? integration , scvi , clustering	1	123	October 22, 2025
Potential bug in scvi.model.TOTALVI.setup_mudata	2	46	October 10, 2025
Is Gaussian mixture VAE implemented in scVI-tools?	3	75	September 25, 2025
Preprocess of scATAC use for peakVI or MultiVI	5	169	September 3, 2025
Using ResolVI’s Unsupervised Mode for Cell Annotation	7	311	August 26, 2025
Get_normalized_expression causes my kernel to disconnect scanvi	1	71	August 19, 2025