Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1133	March 4, 2022
Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)	10	105	June 23, 2025
Shared cell types not mixing when integrating datasets from different species scvi , integration	4	25	June 19, 2025
Preprocess of scATAC use for peakVI or MultiVI	2	10	June 19, 2025
SMART-seq and MARS-seq pipelines integration	1	20	June 19, 2025
Workflow advice for totalVI in CITE-seq Multiplexed data totalvi	3	39	June 19, 2025
Domain adaptation to pre-train batch correction model using paired data developer , integration , scvi	12	88	May 27, 2025
Amortized LDA Topic Modeling - picking the right number of topics	8	83	June 4, 2025
scVI batch correction clusters all cells from sample in a circle (potential artifact) integration , scvi	14	79	June 3, 2025
Macbook M1 M2 mps acceleration with scVI developer	9	1571	May 30, 2025
Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression totalvi	0	19	May 29, 2025
Problems with Bayes factors and LFC changes using model.differential_expression() diff-exp	6	114	May 28, 2025
Help on MultiVI for data modality totalvi	1	184	May 16, 2025
Protocol for model optimization (currently focused on MultiVI) multivi	3	538	May 14, 2025
How to interpret reconstruction loss increase but elbo loss decrease on trained scvi and scanvi models	1	41	May 11, 2025
Nan values in the latent of scanvi_query scanvi	1	17	April 23, 2025
Modify gene identifiers stored in existing scVI model	1	27	April 20, 2025
Anndata Manager Store	11	47	April 20, 2025
Scvi package can't be installed into google colab? scvi	6	39	April 20, 2025
Is the scVI model applicable to bulk RNA-seq data from cell lines? scvi	1	46	April 16, 2025
Understanding scVI integration inside R with Seurat v5 & SCTransform integration	1	120	April 6, 2025
How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)? integration	8	42	April 10, 2025
Suggestions for training on xenium spatial transcriptomics dataset	5	154	March 22, 2025
Error when running scvi.data.add_dna_sequence scvi , integration	1	45	March 18, 2025
Scvi-tools solo return synthetic doublets	3	25	March 18, 2025
SysVI model and normalized expression scvi , integration	1	66	March 15, 2025
Scvi-tools and xenium scvi , integration	7	390	March 13, 2025
Unexpected exception formatting exception when prepare_query_anndata scanvi	4	95	March 11, 2025
DestVI: how to load a DestVI model that was saved as a pickle destvi	1	39	March 9, 2025
Parameters in training model for integrating datasets with scVI in R model-fit , integration , scvi	13	94	March 9, 2025