Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1121	March 4, 2022
How to interpret reconstruction loss increase but elbo loss decrease on trained scvi and scanvi models	1	13	May 11, 2025
Amortized LDA Topic Modeling - picking the right number of topics	3	30	May 11, 2025
Domain adaptation to pre-train batch correction model using paired data developer , integration , scvi	6	25	May 4, 2025
Problems with Bayes factors and LFC changes using model.differential_expression() diff-exp	5	62	April 30, 2025
Nan values in the latent of scanvi_query scanvi	1	14	April 23, 2025
Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)	6	57	April 22, 2025
Modify gene identifiers stored in existing scVI model	1	23	April 20, 2025
Anndata Manager Store	11	41	April 20, 2025
Scvi package can't be installed into google colab? scvi	6	28	April 20, 2025
Workflow advice for totalVI in CITE-seq Multiplexed data totalvi	1	18	April 17, 2025
Is the scVI model applicable to bulk RNA-seq data from cell lines? scvi	1	31	April 16, 2025
Understanding scVI integration inside R with Seurat v5 & SCTransform integration	1	64	April 6, 2025
How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)? integration	8	37	April 10, 2025
Suggestions for training on xenium spatial transcriptomics dataset	5	137	March 22, 2025
Error when running scvi.data.add_dna_sequence scvi , integration	1	41	March 18, 2025
Scvi-tools solo return synthetic doublets	3	24	March 18, 2025
SysVI model and normalized expression scvi , integration	1	54	March 15, 2025
Scvi-tools and xenium scvi , integration	7	333	March 13, 2025
Unexpected exception formatting exception when prepare_query_anndata scanvi	4	58	March 11, 2025
DestVI: how to load a DestVI model that was saved as a pickle destvi	1	33	March 9, 2025
Parameters in training model for integrating datasets with scVI in R model-fit , integration , scvi	13	80	March 9, 2025
Understanding batch-corrected counts in scVI	6	120	March 9, 2025
Add new data to existing integration	3	50	March 7, 2025
Issue with retrain scANVI model scanvi	1	38	March 3, 2025
Issue with scVI model device scvi	2	34	March 3, 2025
In which direction is the LCF calculated when using the function differential_expression? diff-exp , scvi	1	23	March 2, 2025
GIMVI genes imputation gimvi , scvi	1	31	February 26, 2025
Function in scanvi that can help compute the probability of having a latent cell state given a cell type scanvi	1	27	February 26, 2025
Set of guidelines for SCVI and VisiumHD data scvi	0	45	February 25, 2025