Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	0	1227	October 19, 2020
mrVI and groupby=None	2	35	June 25, 2026
Choosing number of latent variables	3	59	May 26, 2026
Getting normalized expression integration , diff-exp , scvi	13	138	May 13, 2026
Using curated marker genes together with HVGs for scVI feature selection in adult skeletal muscle snRNA-seq	1	43	May 12, 2026
Using ResolVI’s Unsupervised Mode for Cell Annotation	9	563	May 7, 2026
Integration challenges in a multi-dataset single cell type maturation atlas scvi	2	55	April 24, 2026
MrVI input and interpretation	28	1947	April 23, 2026
ResolVI Corrected Counts for Segmented Visium HD Data scvi	3	95	April 23, 2026
Correct way to run SOLO for doublet detection scvi , solo , doublets	2	60	April 23, 2026
Mapping 10X Xenium 5k data to scRNA-seq reference integration	3	87	April 23, 2026
PeakVI preprocessing for multi-timepoint scATAC-seq when peak coordinates differ slightly across samples peakvi	2	39	April 23, 2026
MRVI Jax Error "Invalid component distribution" integration	3	41	April 13, 2026
CPU memory usage in multi-GPU training	6	92	April 4, 2026
Unstable result scvi	2	358	March 27, 2026
Macbook M1 M2 mps acceleration with scVI developer	10	2211	March 3, 2026
Regarding resolvi reproducibility scripts and fov for xenium scvi	2	76	March 2, 2026
Is older advice for estimating optimal number of epochs for model training of scVI still recommended? scrna-seq , scvi	6	138	March 1, 2026
Ablating latent variables in LinearSCVI	5	197	February 24, 2026
Scvi-tools not allowing me to download cellxgene census data scvi , scvi-tools	2	49	January 28, 2026
Does Decipher require cell type annotation	6	79	January 28, 2026
Best practices for downstream analysis of Resolvi-corrected data	2	264	January 27, 2026
Resolvi differential test does not converge (?)	5	122	January 15, 2026
Data scaling for cytovi	2	71	January 15, 2026
Imputation/Denoise output scvi	1	62	January 15, 2026
SCANVI Model Loading Issue: Partial Data and Workaround scanvi	1	44	January 11, 2026
Error in training resolvi model	5	120	January 5, 2026
Predict cell type with scANVI for spatial transcriptomics data (Xenium) integration , scanvi , scvi	7	500	December 28, 2025
Issue with scVI VAE reconstruction: High sensitivity to library size and poor rank preservation scvi	1	128	December 9, 2025
Issue with multiVI get_normalized_expression and get_normalized_accessibility multivi	5	135	December 7, 2025