Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1109	March 4, 2022
How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)? integration	4	10	April 1, 2025
Suggestions for training on xenium spatial transcriptomics dataset	5	99	March 22, 2025
Error when running scvi.data.add_dna_sequence scvi , integration	1	28	March 18, 2025
Scvi-tools solo return synthetic doublets	3	20	March 18, 2025
SysVI model and normalized expression scvi , integration	1	38	March 15, 2025
Scvi-tools and xenium scvi , integration	7	271	March 13, 2025
Unexpected exception formatting exception when prepare_query_anndata scanvi	4	30	March 11, 2025
DestVI: how to load a DestVI model that was saved as a pickle destvi	1	17	March 9, 2025
Parameters in training model for integrating datasets with scVI in R model-fit , integration , scvi	13	63	March 9, 2025
Understanding batch-corrected counts in scVI	6	73	March 9, 2025
Add new data to existing integration	3	36	March 7, 2025
Issue with retrain scANVI model scanvi	1	27	March 3, 2025
Issue with scVI model device scvi	2	23	March 3, 2025
In which direction is the LCF calculated when using the function differential_expression? diff-exp , scvi	1	21	March 2, 2025
GIMVI genes imputation gimvi , scvi	1	18	February 26, 2025
Function in scanvi that can help compute the probability of having a latent cell state given a cell type scanvi	1	20	February 26, 2025
Set of guidelines for SCVI and VisiumHD data scvi	0	22	February 25, 2025
Differential Expression and Batch Correction scvi	1	93	February 20, 2025
SOLO/scVI .train() error related to batch_size? scvi	6	1224	February 20, 2025
Question about interpreting the DEGs associated with disease changes using MrVI	2	37	February 11, 2025
Ablating latent variables in LinearSCVI	3	33	February 6, 2025
TotalVI not fully integrating CITEseq cells with GEX and missing protein values integration , totalvi	1	22	February 6, 2025
Differential gene expression shows very low raw_means	2	31	January 30, 2025
The mean of the the scVI ZINB model distribution (related to supplementary note 3) scvi	4	33	January 29, 2025
How to appropriately transfer annotations from anndata to seurat anndata	2	93	January 24, 2025
Best practice for handling custom points during SCVI training	4	52	January 24, 2025
Workflow to integrate dataset from two different species	1	74	January 21, 2025
Scvi embedding from Census API by CellxGene	1	24	January 20, 2025
Model cannot be initialized and return error	6	54	January 15, 2025