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scvi-tools
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About the scvi-tools category
For questions about using scvi-tools.
2
844
March 4, 2022
scRNA-seq batch correction for DestVI
destvi
,
scvi-tools
0
23
March 26, 2024
Interpreting model history curves
peakvi
1
42
March 23, 2024
Remove outliers from trained scVI model
integration
,
scvi
3
58
March 23, 2024
Questions about reference mapping
1
51
March 23, 2024
Issues running the updated version of MrVI
integration
0
44
March 18, 2024
Extracting Normalized Expression from Trained Model on Variable Subset
scvi
2
40
March 14, 2024
Access to each training example's original index in the input Anndata object
scrna-seq
,
integration
,
scvi
,
developer
0
37
March 12, 2024
How to interpret the latent space in scVI
scvi
6
296
March 5, 2024
Explicit Access to the Training Set During scVI Training
integration
,
scvi
0
39
March 4, 2024
Unexpected Effect of Augmentations on scVI Batch Integration
integration
,
scvi
0
199
March 2, 2024
Scvi performance on nvidia h100 vs a100
4
83
March 1, 2024
Help on MultiVI for data modality
totalvi
0
46
February 29, 2024
Incorporating augmentations (per batch) for scVI training
scvi
11
171
February 28, 2024
Loading model.pt in R
0
45
February 21, 2024
Reloading saved model gives different results
scvi
7
133
February 20, 2024
Clustering with X_scVI after removing doublets
0
50
February 20, 2024
Preserving biological variability in scVI sample integration
integration
,
scvi
4
147
February 16, 2024
Macbook M1 M2 mps acceleration with scVI
developer
4
269
February 16, 2024
Trouble with scvi environment from reticulate in R to run seurat pipeline
1
118
February 16, 2024
How to compute the integration metrics
multivi
1
61
February 16, 2024
Error when training model on M3 Max MPS
5
453
February 16, 2024
Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
integration
,
scvi
,
developer
1
89
February 16, 2024
Running totalVI by batch
1
68
February 16, 2024
Failure to remove a batch_key/ effect of number of LVs
integration
,
scvi
6
155
February 9, 2024
Scvi and subtyping
integration
,
scvi
1
121
February 9, 2024
SCVI tools with large datasets
2
163
February 9, 2024
Computing neighbors from X_scANVI representation
scanvi
,
scvi
0
71
February 4, 2024
How to save intermediate checkpoints?
3
271
February 3, 2024
Using a model with categorical_covariate_key instead of batch_key
2
149
February 1, 2024
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