Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	170	March 4, 2022
How to impute the modality (like ATAC) when I only have the other modality (RNA) using a pre-trained MultiVI? multivi	4	22	June 30, 2022
Passing cell neighbor indices to my encoder scvi	4	27	June 29, 2022
Pretrained models on Tabula sapiens	4	22	June 23, 2022
Query data formatting to map onto a reference scarches	3	26	June 22, 2022
How to extract batch-corrected expression matrix from trained scVI vae model scvi	5	188	June 20, 2022
Directly accessing scVI's decoder scvi	9	275	June 14, 2022
DestVI Tensor Nan Error scvi , destvi	5	36	June 14, 2022
DE analysis between two batch-specific clusters diff-exp , scvi	8	121	June 12, 2022
Error on scvi_model.train(100) for seed label transfer scanvi	1	140	June 8, 2022
Error when training SCVI on reference data scvi	4	20	June 4, 2022
Error in scvi.model.SCANVI.load_query_data scanvi	2	15	June 3, 2022
Autoencoder gene expression reconstruction accuracy	1	50	June 1, 2022
Mapping old scANVI code to 0.16.2	8	46	June 1, 2022
CellAssign keyword error: After Integration scvi	3	25	May 26, 2022
What model to use when integrating batches of scRNA-seq matrices containing >150,000 T and innate lymphoid cell (ILC) sub-populations scvi	7	70	May 26, 2022
The totalVI DE test; gene names totalvi	2	37	May 24, 2022
TotalVI log normalization and non-negativity totalvi	3	52	May 23, 2022
Batch effect not entirely removed in PeakVI peakvi	0	39	May 18, 2022
SCANVI: Label transfer from adult to embryonic data? scanvi	1	40	May 17, 2022
Consistent results when using scvi.model.SCVI scvi , developer	3	46	May 11, 2022
scvi.model.SCVI for DE gene anlaysis	1	75	May 8, 2022
Spatial datasets integration scvi	0	48	May 5, 2022
Negative binomial regression on numerical variables scvi	0	42	May 3, 2022
Semi supervised integration update scanvi	2	44	May 3, 2022
What was the basis for parameter choices in tutorials? tutorials , scanvi	1	97	April 29, 2022
TotalVI- ADT filtering and zero value markers totalvi	0	57	April 26, 2022
Unbalanced cell types and transform_batch scvi	3	84	April 22, 2022
SCANVI: Label transfer from in vivo reference to in vitro model? scanvi	2	64	April 21, 2022
Creating an atlas for online updating / architectural surgury using scANVI and partially labelled data scanvi , scarches	1	52	April 14, 2022