Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1125	March 4, 2022
Amortized LDA Topic Modeling - picking the right number of topics	7	64	June 3, 2025
scVI batch correction clusters all cells from sample in a circle (potential artifact) integration , scvi	14	56	June 3, 2025
Macbook M1 M2 mps acceleration with scVI developer	9	1536	May 30, 2025
Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression totalvi	0	7	May 29, 2025
Problems with Bayes factors and LFC changes using model.differential_expression() diff-exp	6	96	May 28, 2025
Domain adaptation to pre-train batch correction model using paired data developer , integration , scvi	12	80	May 27, 2025
Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)	9	87	May 19, 2025
Help on MultiVI for data modality totalvi	1	176	May 16, 2025
Protocol for model optimization (currently focused on MultiVI) multivi	3	531	May 14, 2025
How to interpret reconstruction loss increase but elbo loss decrease on trained scvi and scanvi models	1	32	May 11, 2025
Nan values in the latent of scanvi_query scanvi	1	16	April 23, 2025
Modify gene identifiers stored in existing scVI model	1	24	April 20, 2025
Anndata Manager Store	11	45	April 20, 2025
Scvi package can't be installed into google colab? scvi	6	33	April 20, 2025
Workflow advice for totalVI in CITE-seq Multiplexed data totalvi	1	22	April 17, 2025
Is the scVI model applicable to bulk RNA-seq data from cell lines? scvi	1	38	April 16, 2025
Understanding scVI integration inside R with Seurat v5 & SCTransform integration	1	92	April 6, 2025
How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)? integration	8	40	April 10, 2025
Suggestions for training on xenium spatial transcriptomics dataset	5	146	March 22, 2025
Error when running scvi.data.add_dna_sequence scvi , integration	1	43	March 18, 2025
Scvi-tools solo return synthetic doublets	3	25	March 18, 2025
SysVI model and normalized expression scvi , integration	1	57	March 15, 2025
Scvi-tools and xenium scvi , integration	7	359	March 13, 2025
Unexpected exception formatting exception when prepare_query_anndata scanvi	4	78	March 11, 2025
DestVI: how to load a DestVI model that was saved as a pickle destvi	1	35	March 9, 2025
Parameters in training model for integrating datasets with scVI in R model-fit , integration , scvi	13	86	March 9, 2025
Understanding batch-corrected counts in scVI	6	132	March 9, 2025
Add new data to existing integration	3	54	March 7, 2025
Issue with retrain scANVI model scanvi	1	42	March 3, 2025