Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	0	1238	October 19, 2020
Can scVI take as input SCT-normalized data? integration , scvi	0	12	August 13, 2026
Allowed downstream analysis with get_normalized_expression? integration , scvi	6	117	July 30, 2026
Within-individual DE/DA with MrVI	1	30	July 15, 2026
SCVI view_anndata_setup causes AttributeError with rich.pretty integration , scvi	1	32	July 8, 2026
mrVI and groupby=None	2	55	June 25, 2026
Choosing number of latent variables	3	80	May 26, 2026
Getting normalized expression integration , diff-exp , scvi	13	215	May 13, 2026
Using curated marker genes together with HVGs for scVI feature selection in adult skeletal muscle snRNA-seq	1	62	May 12, 2026
Using ResolVI’s Unsupervised Mode for Cell Annotation	9	645	May 7, 2026
Integration challenges in a multi-dataset single cell type maturation atlas scvi	2	74	April 24, 2026
MrVI input and interpretation	28	2053	April 23, 2026
ResolVI Corrected Counts for Segmented Visium HD Data scvi	3	141	April 23, 2026
Correct way to run SOLO for doublet detection scvi , solo , doublets	2	91	April 23, 2026
Mapping 10X Xenium 5k data to scRNA-seq reference integration	3	135	April 23, 2026
PeakVI preprocessing for multi-timepoint scATAC-seq when peak coordinates differ slightly across samples peakvi	2	59	April 23, 2026
MRVI Jax Error "Invalid component distribution" integration	3	57	April 13, 2026
CPU memory usage in multi-GPU training	6	121	April 4, 2026
Unstable result scvi	2	370	March 27, 2026
Macbook M1 M2 mps acceleration with scVI developer	10	2270	March 3, 2026
Regarding resolvi reproducibility scripts and fov for xenium scvi	2	101	March 2, 2026
Is older advice for estimating optimal number of epochs for model training of scVI still recommended? scrna-seq , scvi	6	188	March 1, 2026
Ablating latent variables in LinearSCVI	5	217	February 24, 2026
Scvi-tools not allowing me to download cellxgene census data scvi , scvi-tools	2	72	January 28, 2026
Does Decipher require cell type annotation	6	111	January 28, 2026
Best practices for downstream analysis of Resolvi-corrected data	2	310	January 27, 2026
Resolvi differential test does not converge (?)	5	158	January 15, 2026
Data scaling for cytovi	2	86	January 15, 2026
Imputation/Denoise output scvi	1	78	January 15, 2026
SCANVI Model Loading Issue: Partial Data and Workaround scanvi	1	54	January 11, 2026