Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1086	March 4, 2022
Workflow to integrate dataset from two different species	1	18	January 21, 2025
Scvi embedding from Census API by CellxGene	1	8	January 20, 2025
Model cannot be initialized and return error	6	42	January 15, 2025
Best practice for handling custom points during SCVI training	3	26	January 14, 2025
Error loading someone else's SCVI model: no such file (attr.pkl) scvi	1	12	January 13, 2025
Impact of batch on TotalVI results totalvi	1	34	January 5, 2025
Differential expression analysis	4	603	January 5, 2025
What training datasets are used in the scVI pretrained model (version 2024-07-01)? integration , scvi	2	37	December 23, 2024
Suggestions for training on xenium spatial transcriptomics dataset	0	28	December 21, 2024
Issue with model.train() in scVI - Training Stuck at 0% scvi	1	31	December 15, 2024
Train scVI on a sampled dataset	8	71	December 6, 2024
Error loading previously saved scVI model after updating packages / cloud environment	6	355	December 5, 2024
CUDA is available but Training scVI models is too slow scvi	4	36	December 4, 2024
scVI: effect of unbalanced number of cells in batches scvi , integration	1	26	November 27, 2024
Zero value with scvi normalisation scvi	1	19	November 27, 2024
Getting the parameters and their names of scVI scvi	3	380	November 27, 2024
Scvi-tools: different DEGs when comparing same data diff-exp , scvi , integration	2	31	November 19, 2024
Error training MrVI: Backend 'cuda' failed to initialize	2	38	November 18, 2024
Integrating different tissues with scVI integration , scvi	3	91	November 15, 2024
Integration with or without covariate	1	44	November 11, 2024
scVI 21618 problem scvi , integration	5	212	November 7, 2024
Iteration consumes memory scvi	5	42	November 7, 2024
Inconsistency of scvi/SOLO in predicting doublets?	5	31	November 7, 2024
Why totalvi can be used as denoising data? scvi	1	19	November 7, 2024
Documentation for training with multiple GPUs	4	186	November 6, 2024
New scvi-tools version using SOLO returns probabilities, how to return logits like in version 1.1.2 solo , scvi	7	93	July 2, 2024
Autotune failed due to "h5py objects cannot be pickled"	4	58	October 23, 2024
Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI scanvi	8	94	October 17, 2024
SCANVI inferred cell types don't make sense scanvi	1	50	October 17, 2024