Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1076	March 4, 2022
What training datasets are used in the scVI pretrained model (version 2024-07-01)? integration , scvi	2	3	December 23, 2024
Suggestions for training on xenium spatial transcriptomics dataset	0	6	December 21, 2024
Issue with model.train() in scVI - Training Stuck at 0% scvi	1	13	December 15, 2024
Train scVI on a sampled dataset	8	58	December 6, 2024
Error loading previously saved scVI model after updating packages / cloud environment	6	314	December 5, 2024
CUDA is available but Training scVI models is too slow scvi	4	16	December 4, 2024
scVI: effect of unbalanced number of cells in batches scvi , integration	1	22	November 27, 2024
Zero value with scvi normalisation scvi	1	14	November 27, 2024
Getting the parameters and their names of scVI scvi	3	370	November 27, 2024
Scvi-tools: different DEGs when comparing same data diff-exp , scvi , integration	2	22	November 19, 2024
Error training MrVI: Backend 'cuda' failed to initialize	2	27	November 18, 2024
Integrating different tissues with scVI integration , scvi	3	72	November 15, 2024
Integration with or without covariate	1	35	November 11, 2024
scVI 21618 problem scvi , integration	5	208	November 7, 2024
Iteration consumes memory scvi	5	37	November 7, 2024
Inconsistency of scvi/SOLO in predicting doublets?	5	28	November 7, 2024
Why totalvi can be used as denoising data? scvi	1	18	November 7, 2024
Documentation for training with multiple GPUs	4	168	November 6, 2024
New scvi-tools version using SOLO returns probabilities, how to return logits like in version 1.1.2 solo , scvi	7	90	July 2, 2024
Autotune failed due to "h5py objects cannot be pickled"	4	52	October 23, 2024
Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI scanvi	8	85	October 17, 2024
SCANVI inferred cell types don't make sense scanvi	1	39	October 17, 2024
Using low precision matrix multiplication to boost performance	6	88	October 17, 2024
Model Training got only 2 epochs integration , scvi	4	49	October 14, 2024
Trouble integrating my dataset into a reference dataset integration	16	135	October 11, 2024
Is it possible to add extra covariate categories to a trained SCVI model? scrna-seq , scvi , scanvi , integration	3	48	October 4, 2024
Error in MrVI differential abundance	1	27	September 27, 2024
Scale for predicted vs observed plot in SCVI-SCANVI mapping?	2	26	September 25, 2024
Scvi-tools and xenium scvi , integration	6	139	September 25, 2024