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scvi-tools
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About the scvi-tools category
For questions about using scvi-tools.
2
1121
March 4, 2022
How to interpret reconstruction loss increase but elbo loss decrease on trained scvi and scanvi models
1
13
May 11, 2025
Amortized LDA Topic Modeling - picking the right number of topics
3
30
May 11, 2025
Domain adaptation to pre-train batch correction model using paired data
developer
,
integration
,
scvi
6
25
May 4, 2025
Problems with Bayes factors and LFC changes using model.differential_expression()
diff-exp
5
62
April 30, 2025
Nan values in the latent of scanvi_query
scanvi
1
14
April 23, 2025
Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)
6
57
April 22, 2025
Modify gene identifiers stored in existing scVI model
1
23
April 20, 2025
Anndata Manager Store
11
41
April 20, 2025
Scvi package can't be installed into google colab?
scvi
6
28
April 20, 2025
Workflow advice for totalVI in CITE-seq Multiplexed data
totalvi
1
18
April 17, 2025
Is the scVI model applicable to bulk RNA-seq data from cell lines?
scvi
1
31
April 16, 2025
Understanding scVI integration inside R with Seurat v5 & SCTransform
integration
1
64
April 6, 2025
How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)?
integration
8
37
April 10, 2025
Suggestions for training on xenium spatial transcriptomics dataset
5
137
March 22, 2025
Error when running scvi.data.add_dna_sequence
scvi
,
integration
1
41
March 18, 2025
Scvi-tools solo return synthetic doublets
3
24
March 18, 2025
SysVI model and normalized expression
scvi
,
integration
1
54
March 15, 2025
Scvi-tools and xenium
scvi
,
integration
7
333
March 13, 2025
Unexpected exception formatting exception when prepare_query_anndata
scanvi
4
58
March 11, 2025
DestVI: how to load a DestVI model that was saved as a pickle
destvi
1
33
March 9, 2025
Parameters in training model for integrating datasets with scVI in R
model-fit
,
integration
,
scvi
13
80
March 9, 2025
Understanding batch-corrected counts in scVI
6
120
March 9, 2025
Add new data to existing integration
3
50
March 7, 2025
Issue with retrain scANVI model
scanvi
1
38
March 3, 2025
Issue with scVI model device
scvi
2
34
March 3, 2025
In which direction is the LCF calculated when using the function differential_expression?
diff-exp
,
scvi
1
23
March 2, 2025
GIMVI genes imputation
gimvi
,
scvi
1
31
February 26, 2025
Function in scanvi that can help compute the probability of having a latent cell state given a cell type
scanvi
1
27
February 26, 2025
Set of guidelines for SCVI and VisiumHD data
scvi
0
45
February 25, 2025
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