scverse
Help
scvi-tools
Topic
Replies
Views
Activity
About the scvi-tools category
For questions about using scvi-tools.
2
1217
March 4, 2022
Getting normalized expression
integration
,
diff-exp
,
scvi
13
51
May 13, 2026
Using curated marker genes together with HVGs for scVI feature selection in adult skeletal muscle snRNA-seq
1
26
May 12, 2026
Using ResolVI’s Unsupervised Mode for Cell Annotation
9
478
May 7, 2026
Integration challenges in a multi-dataset single cell type maturation atlas
scvi
2
35
April 24, 2026
MrVI input and interpretation
28
1669
April 23, 2026
ResolVI Corrected Counts for Segmented Visium HD Data
scvi
3
48
April 23, 2026
Correct way to run SOLO for doublet detection
scvi
,
solo
,
doublets
2
40
April 23, 2026
Mapping 10X Xenium 5k data to scRNA-seq reference
integration
3
46
April 23, 2026
PeakVI preprocessing for multi-timepoint scATAC-seq when peak coordinates differ slightly across samples
peakvi
2
26
April 23, 2026
MRVI Jax Error "Invalid component distribution"
integration
3
26
April 13, 2026
CPU memory usage in multi-GPU training
6
59
April 4, 2026
Unstable result
scvi
2
350
March 27, 2026
Macbook M1 M2 mps acceleration with scVI
developer
10
2148
March 3, 2026
Regarding resolvi reproducibility scripts and fov for xenium
scvi
2
50
March 2, 2026
Is older advice for estimating optimal number of epochs for model training of scVI still recommended?
scrna-seq
,
scvi
6
93
March 1, 2026
Ablating latent variables in LinearSCVI
5
179
February 24, 2026
Scvi-tools not allowing me to download cellxgene census data
scvi
,
scvi-tools
2
33
January 28, 2026
Does Decipher require cell type annotation
6
54
January 28, 2026
Best practices for downstream analysis of Resolvi-corrected data
2
211
January 27, 2026
Resolvi differential test does not converge (?)
5
93
January 15, 2026
Data scaling for cytovi
2
48
January 15, 2026
Imputation/Denoise output
scvi
1
47
January 15, 2026
SCANVI Model Loading Issue: Partial Data and Workaround
scanvi
1
34
January 11, 2026
Error in training resolvi model
5
105
January 5, 2026
Predict cell type with scANVI for spatial transcriptomics data (Xenium)
integration
,
scanvi
,
scvi
7
394
December 28, 2025
Issue with scVI VAE reconstruction: High sensitivity to library size and poor rank preservation
scvi
1
112
December 9, 2025
Issue with multiVI get_normalized_expression and get_normalized_accessibility
multivi
5
125
December 7, 2025
Scvi 1.4.0. model.differential_expression outputs
scvi
1
74
December 7, 2025
Corrected count for resolvi
scvi
1
110
November 25, 2025
next page →