Latest scvi-tools topics

Topic	Replies	Views	Activity
About the scvi-tools category For questions about using scvi-tools.	2	1065	March 4, 2022
Zero value with scvi normalisation scvi	0	5	November 20, 2024
Scvi-tools: different DEGs when comparing same data diff-exp , scvi , integration	2	9	November 19, 2024
scVI: effect of unbalanced number of cells in batches scvi , integration	0	8	November 19, 2024
Error training MrVI: Backend 'cuda' failed to initialize	2	18	November 18, 2024
Integrating different tissues with scVI integration , scvi	3	53	November 15, 2024
Integration with or without covariate	1	24	November 11, 2024
scVI 21618 problem scvi , integration	5	194	November 7, 2024
Iteration consumes memory scvi	5	33	November 7, 2024
Inconsistency of scvi/SOLO in predicting doublets?	5	26	November 7, 2024
Why totalvi can be used as denoising data? scvi	1	11	November 7, 2024
Documentation for training with multiple GPUs	4	132	November 6, 2024
New scvi-tools version using SOLO returns probabilities, how to return logits like in version 1.1.2 solo , scvi	7	79	July 2, 2024
Autotune failed due to "h5py objects cannot be pickled"	4	42	October 23, 2024
Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI scanvi	8	81	October 17, 2024
Train scVI on a sampled dataset	5	40	October 17, 2024
SCANVI inferred cell types don't make sense scanvi	1	34	October 17, 2024
Using low precision matrix multiplication to boost performance	6	54	October 17, 2024
Model Training got only 2 epochs integration , scvi	4	38	October 14, 2024
Trouble integrating my dataset into a reference dataset integration	16	116	October 11, 2024
Is it possible to add extra covariate categories to a trained SCVI model? scrna-seq , scvi , scanvi , integration	3	47	October 4, 2024
Error in MrVI differential abundance	1	26	September 27, 2024
Scale for predicted vs observed plot in SCVI-SCANVI mapping?	2	25	September 25, 2024
Scvi-tools and xenium scvi , integration	6	108	September 25, 2024
scVI with large datasets	4	60	September 24, 2024
ZeroDivisionError using scvi-tools scatac-seq , scrna-seq	15	65	September 23, 2024
Embedding number for visualization integration , scvi	10	41	September 23, 2024
scArches with multiple covariates scarches , integration , scvi	9	628	September 22, 2024
Ambient RNA removal before TotalVI?	1	19	September 22, 2024
scVI reproducibility seed issue scvi	4	703	September 19, 2024