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Regarding resolvi reproducibility scripts and fov for xenium
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2
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29
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March 2, 2026
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Is older advice for estimating optimal number of epochs for model training of scVI still recommended?
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6
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48
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March 1, 2026
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Scvi-tools not allowing me to download cellxgene census data
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2
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24
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January 28, 2026
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Imputation/Denoise output
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1
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25
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January 15, 2026
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Predict cell type with scANVI for spatial transcriptomics data (Xenium)
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7
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275
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December 28, 2025
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Issue with scVI VAE reconstruction: High sensitivity to library size and poor rank preservation
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1
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85
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December 9, 2025
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Scvi 1.4.0. model.differential_expression outputs
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1
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48
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December 7, 2025
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Corrected count for resolvi
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1
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75
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November 25, 2025
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Question about complex experiment
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1
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72
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November 25, 2025
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Clarification on the random variable W in the decoder
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2
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51
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November 11, 2025
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Training not using the full GPU
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3
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78
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November 10, 2025
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Question about get_normalized_expression computation
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3
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116
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November 5, 2025
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Same scVI model with different values on mac silicon and linux?!
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1
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50
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November 4, 2025
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Excluding Ig and ribosomal genes from HVG selection in scVI, best practice?
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1
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127
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October 22, 2025
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How to handle batch effects within the query dataset when using scArches + SCVI?
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1
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115
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July 31, 2025
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Implementing Warmup to a component based on epoch
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2
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68
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July 31, 2025
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Deconvolute spatial transcriptomics (visium) with unannotated single-cell (10x)
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3
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159
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July 10, 2025
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Does MultiVI support using tile matrix directly instead of peak calling for ATAC input?
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2
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87
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July 9, 2025
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DestVI.from_rna_model RuntimeError: Error(s) in loading state_dict for FCLayers
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1
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70
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July 9, 2025
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Shared cell types not mixing when integrating datasets from different species
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4
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218
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June 19, 2025
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Domain adaptation to pre-train batch correction model using paired data
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12
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248
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May 27, 2025
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scVI batch correction clusters all cells from sample in a circle (potential artifact)
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14
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214
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June 3, 2025
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Scvi package can't be installed into google colab?
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6
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128
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April 20, 2025
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Is the scVI model applicable to bulk RNA-seq data from cell lines?
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1
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166
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April 16, 2025
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How should I calculate the knn entropy using the leiden clusters?
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1
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63
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April 10, 2025
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inferCNVpy after running scVI with batch as key
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5
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971
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March 24, 2025
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Error when running scvi.data.add_dna_sequence
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1
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82
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March 18, 2025
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SysVI model and normalized expression
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1
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172
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March 15, 2025
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Scvi-tools and xenium
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7
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768
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March 13, 2025
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Parameters in training model for integrating datasets with scVI in R
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13
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191
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March 9, 2025
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