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Squidpy calculations on giant data
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1
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126
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October 9, 2026
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metal-SingleCell — a work-in-progress Metal/MLX port of rapids-singlecell for Apple Silicon (feedback welcome)
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1
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122
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July 15, 2026
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Macbook M1 M2 mps acceleration with scVI
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10
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2352
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March 3, 2026
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Sc.pp.filter_genes how to use
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0
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116
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December 16, 2025
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Inquiry Regarding DRVI Model Compatibility with scANVI for Embedding Optimization?
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1
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101
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November 25, 2025
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Help with package setup
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2
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87
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October 7, 2025
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Domain adaptation to pre-train batch correction model using paired data
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12
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425
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May 27, 2025
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Daf (Data in Axes in Formats)
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0
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69
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September 24, 2024
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Access to each training example's original index in the input Anndata object
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0
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165
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March 12, 2024
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Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
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1
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370
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February 16, 2024
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Trying to read custom genome using sc.read_10x_h5
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0
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414
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January 26, 2024
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Questions about scib weight choice
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0
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249
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December 5, 2023
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UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored
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8
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8112
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December 1, 2023
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Expression_cutoff optiion from scanpy.pl.dotplot function
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0
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270
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September 28, 2023
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How to best integrate Genomic Variant Information
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1
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335
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August 16, 2023
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Debugging Issue for CITE-seq analysis with totalVI juytper notebook tutorial
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6
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437
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June 21, 2023
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COMPASS Installation tutorial - CPLEX Installation
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0
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361
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June 19, 2023
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AnnLoader for mudata?
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1
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606
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April 18, 2023
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Question about Github Issue
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2
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1196
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March 22, 2023
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Make another probabilistic model in scvi-tools
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2
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453
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March 22, 2023
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Mini-batching error after registering MuData .varm field with custom scvi-tools model
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1
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352
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March 1, 2023
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scVI access the model
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4
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591
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February 9, 2023
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How to create a layer over a subset of .obs or .vars?
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1
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703
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January 20, 2023
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Adding "equipment" to AnnData objects for neat addition of functionality
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3
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552
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November 1, 2022
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How to dynamically mask categorical_covariate_keys during training?
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3
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452
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October 19, 2022
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Progress not reporting loss from custom training plan
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3
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611
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October 5, 2022
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Difference between `TrainingPlan.log()` vs `TrainingPlan.compute_and_log_metrics()`?
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1
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381
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October 5, 2022
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Calls to decoder.forward() in VAE.generative() wrt the current DecoderSCVI API?
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0
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359
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September 15, 2022
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`tests/models/test_pyro.py::test_pyro_bayesian_save_load` fails
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2
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567
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August 26, 2022
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Help understanding inheritance for scvi.models
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1
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433
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August 22, 2022
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