|
metal-SingleCell — a work-in-progress Metal/MLX port of rapids-singlecell for Apple Silicon (feedback welcome)
|
|
0
|
9
|
July 2, 2026
|
|
Macbook M1 M2 mps acceleration with scVI
|
|
10
|
2211
|
March 3, 2026
|
|
Sc.pp.filter_genes how to use
|
|
0
|
81
|
December 16, 2025
|
|
Inquiry Regarding DRVI Model Compatibility with scANVI for Embedding Optimization?
|
|
1
|
67
|
November 25, 2025
|
|
Help with package setup
|
|
2
|
56
|
October 7, 2025
|
|
Domain adaptation to pre-train batch correction model using paired data
|
|
12
|
308
|
May 27, 2025
|
|
Daf (Data in Axes in Formats)
|
|
0
|
48
|
September 24, 2024
|
|
Access to each training example's original index in the input Anndata object
|
|
0
|
148
|
March 12, 2024
|
|
Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
|
|
1
|
331
|
February 16, 2024
|
|
Trying to read custom genome using sc.read_10x_h5
|
|
0
|
393
|
January 26, 2024
|
|
Questions about scib weight choice
|
|
0
|
234
|
December 5, 2023
|
|
UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored
|
|
8
|
8029
|
December 1, 2023
|
|
Expression_cutoff optiion from scanpy.pl.dotplot function
|
|
0
|
255
|
September 28, 2023
|
|
How to best integrate Genomic Variant Information
|
|
1
|
302
|
August 16, 2023
|
|
Debugging Issue for CITE-seq analysis with totalVI juytper notebook tutorial
|
|
6
|
383
|
June 21, 2023
|
|
COMPASS Installation tutorial - CPLEX Installation
|
|
0
|
334
|
June 19, 2023
|
|
AnnLoader for mudata?
|
|
1
|
584
|
April 18, 2023
|
|
Question about Github Issue
|
|
2
|
1139
|
March 22, 2023
|
|
Make another probabilistic model in scvi-tools
|
|
2
|
404
|
March 22, 2023
|
|
Mini-batching error after registering MuData .varm field with custom scvi-tools model
|
|
1
|
329
|
March 1, 2023
|
|
scVI access the model
|
|
4
|
543
|
February 9, 2023
|
|
How to create a layer over a subset of .obs or .vars?
|
|
1
|
660
|
January 20, 2023
|
|
Adding "equipment" to AnnData objects for neat addition of functionality
|
|
3
|
517
|
November 1, 2022
|
|
How to dynamically mask categorical_covariate_keys during training?
|
|
3
|
412
|
October 19, 2022
|
|
Progress not reporting loss from custom training plan
|
|
3
|
573
|
October 5, 2022
|
|
Difference between `TrainingPlan.log()` vs `TrainingPlan.compute_and_log_metrics()`?
|
|
1
|
360
|
October 5, 2022
|
|
Calls to decoder.forward() in VAE.generative() wrt the current DecoderSCVI API?
|
|
0
|
336
|
September 15, 2022
|
|
`tests/models/test_pyro.py::test_pyro_bayesian_save_load` fails
|
|
2
|
540
|
August 26, 2022
|
|
Help understanding inheritance for scvi.models
|
|
1
|
403
|
August 22, 2022
|
|
Consistent results when using scvi.model.SCVI
|
|
3
|
860
|
May 11, 2022
|