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About the squidpy category
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0
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407
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March 4, 2022
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Can we use resolVI and squidpy to annotate a CosMX object based on a single cell reference?
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1
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44
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August 3, 2025
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Good spatial tutorial for beginners
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3
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146
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May 21, 2025
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Getting the same values to have the same colors across multiple plots of spatial_segment?
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0
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16
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March 24, 2025
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Akoya Pheno/CODEX data
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5
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992
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June 21, 2024
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Stitching CoxMx data fovs
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0
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103
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June 18, 2024
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Any existing effort to port squidpy functionalities to R?
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1
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247
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June 12, 2024
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Visium normalization best practices
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5
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1705
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June 11, 2024
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Plotting only transcripts
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4
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258
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March 6, 2024
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Finding centroids with features_segmentation
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0
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133
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February 27, 2024
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Metadata file is empty after reading in with sp.read.vizgen
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2
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277
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January 2, 2024
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Measure cluster colocalizations in spatialRNAseq with scRNAseq clusters
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1
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155
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December 13, 2023
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Pl.ligrec error in latest version of squidpy
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4
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646
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September 27, 2023
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Ligand receptor analysis within squidpy
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0
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318
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August 17, 2023
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Compiling CellComposite & CellLabels
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0
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216
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August 17, 2023
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How to concatenate spatial AnnData objects
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4
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1577
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August 15, 2023
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Problem with plotting spaceranger spatial matrices data
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8
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1076
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July 5, 2023
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How to load the AKOYA(CODEX) processor pipeline outputs a csv files for Squidpy?
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4
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758
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June 27, 2023
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sq.pl.spatial_segment( TypeError: 'collection'
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1
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543
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May 24, 2023
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Spatial Segment TypeError
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1
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658
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May 24, 2023
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How to get [“label”, “centroid”] for each cell with cellpose
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1
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543
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April 2, 2023
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Squidpy comparative statistics
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2
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326
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March 28, 2023
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Centrality Score: Understanding average clustering
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1
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522
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March 28, 2023
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Lasso function for Squidpy
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1
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311
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March 9, 2023
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Data fomr new spatial transcriptomics from 10x
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5
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1054
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March 8, 2023
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Sq.im.calculate_image_features with 2 library IDs
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1
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448
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March 7, 2023
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How do you plotting multiple genes in the one spatial scatter plot
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1
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497
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March 7, 2023
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Can not select part of the adata.obs (corresponding to a library_id)
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3
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518
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February 6, 2023
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Zstack with images having different sizes
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0
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304
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January 26, 2023
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CosMX cell segmentation
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4
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1494
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October 25, 2022
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