|
About the squidpy category
|
|
0
|
440
|
March 4, 2022
|
|
Is squidpy co_occurrence metric symmetric?
|
|
0
|
66
|
November 24, 2025
|
|
Can we use resolVI and squidpy to annotate a CosMX object based on a single cell reference?
|
|
1
|
144
|
August 3, 2025
|
|
Good spatial tutorial for beginners
|
|
3
|
457
|
May 21, 2025
|
|
Getting the same values to have the same colors across multiple plots of spatial_segment?
|
|
0
|
57
|
March 24, 2025
|
|
Akoya Pheno/CODEX data
|
|
5
|
1147
|
June 21, 2024
|
|
Stitching CoxMx data fovs
|
|
0
|
172
|
June 18, 2024
|
|
Any existing effort to port squidpy functionalities to R?
|
|
1
|
305
|
June 12, 2024
|
|
Visium normalization best practices
|
|
5
|
2190
|
June 11, 2024
|
|
Plotting only transcripts
|
|
4
|
328
|
March 6, 2024
|
|
Finding centroids with features_segmentation
|
|
0
|
162
|
February 27, 2024
|
|
Metadata file is empty after reading in with sp.read.vizgen
|
|
2
|
330
|
January 2, 2024
|
|
Measure cluster colocalizations in spatialRNAseq with scRNAseq clusters
|
|
1
|
201
|
December 13, 2023
|
|
Pl.ligrec error in latest version of squidpy
|
|
4
|
694
|
September 27, 2023
|
|
Ligand receptor analysis within squidpy
|
|
0
|
347
|
August 17, 2023
|
|
Compiling CellComposite & CellLabels
|
|
0
|
248
|
August 17, 2023
|
|
How to concatenate spatial AnnData objects
|
|
4
|
1825
|
August 15, 2023
|
|
Problem with plotting spaceranger spatial matrices data
|
|
8
|
1175
|
July 5, 2023
|
|
How to load the AKOYA(CODEX) processor pipeline outputs a csv files for Squidpy?
|
|
4
|
856
|
June 27, 2023
|
|
sq.pl.spatial_segment( TypeError: 'collection'
|
|
1
|
550
|
May 24, 2023
|
|
Spatial Segment TypeError
|
|
1
|
698
|
May 24, 2023
|
|
How to get [“label”, “centroid”] for each cell with cellpose
|
|
1
|
588
|
April 2, 2023
|
|
Squidpy comparative statistics
|
|
2
|
405
|
March 28, 2023
|
|
Centrality Score: Understanding average clustering
|
|
1
|
587
|
March 28, 2023
|
|
Lasso function for Squidpy
|
|
1
|
332
|
March 9, 2023
|
|
Data fomr new spatial transcriptomics from 10x
|
|
5
|
1163
|
March 8, 2023
|
|
Sq.im.calculate_image_features with 2 library IDs
|
|
1
|
491
|
March 7, 2023
|
|
How do you plotting multiple genes in the one spatial scatter plot
|
|
1
|
547
|
March 7, 2023
|
|
Can not select part of the adata.obs (corresponding to a library_id)
|
|
3
|
565
|
February 6, 2023
|
|
Zstack with images having different sizes
|
|
0
|
317
|
January 26, 2023
|