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About the Help category
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0
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602
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March 4, 2022
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mrVI and groupby=None
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2
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29
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June 25, 2026
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"sd.filter_by_table_query()" fails with "IndexError" on SpatialData 0.7.3 / AnnData 0.12.6
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6
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41
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June 22, 2026
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Hitting API rate limits with cell-annotator
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0
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16
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June 11, 2026
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Is squidpy co_occurrence metric symmetric?
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1
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82
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June 10, 2026
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CytoVI took more than 24 hours to train
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6
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208
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June 10, 2026
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Help with cellrank2 macrostates (multiple conditions design)
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3
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57
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June 8, 2026
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Confusion on "no IR" definition in scirpy
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2
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36
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May 26, 2026
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Choosing number of latent variables
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3
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55
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May 26, 2026
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Multiple coordinate systems
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2
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30
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May 26, 2026
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Grouping/merging CosMx FOVs into cores in SpatialData
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6
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53
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May 26, 2026
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Unable to save subset spatialdata to zarr
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1
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29
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May 21, 2026
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Render_points super pixelized after subsetting SpatialData
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2
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31
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May 21, 2026
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Getting normalized expression
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13
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131
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May 13, 2026
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Using curated marker genes together with HVGs for scVI feature selection in adult skeletal muscle snRNA-seq
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1
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40
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May 12, 2026
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Using ResolVI’s Unsupervised Mode for Cell Annotation
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9
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551
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May 7, 2026
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Implementation of PROGENy pathway analysis
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2
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60
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May 1, 2026
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Integration challenges in a multi-dataset single cell type maturation atlas
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2
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52
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April 24, 2026
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MrVI input and interpretation
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28
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1936
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April 23, 2026
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ResolVI Corrected Counts for Segmented Visium HD Data
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3
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93
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April 23, 2026
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Correct way to run SOLO for doublet detection
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2
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55
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April 23, 2026
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Mapping 10X Xenium 5k data to scRNA-seq reference
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3
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85
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April 23, 2026
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PeakVI preprocessing for multi-timepoint scATAC-seq when peak coordinates differ slightly across samples
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2
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36
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April 23, 2026
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Interpreting decoupler results
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1
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50
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April 16, 2026
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Running scCODA with confounding covariate
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0
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21
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April 15, 2026
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MRVI Jax Error "Invalid component distribution"
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3
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38
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April 13, 2026
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Client.restart errors for dask cuda clusters (pooled mode rapids)
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0
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23
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April 10, 2026
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Filter_by_expr parameters Decoupler
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4
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63
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April 8, 2026
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Impact of tmin parameter (decoupler.mt.ulm)
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1
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25
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April 6, 2026
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Multi-threading support in decoupler
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1
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61
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April 6, 2026
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