About the Help category
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145
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March 4, 2022
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Scvi-toools based model does not log metrics on every step
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1
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4
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February 3, 2023
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Correct use of .copy() when working with layers
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0
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9
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February 2, 2023
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Umap results not comparable
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2
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5
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February 2, 2023
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Avoiding AnnData.file._adata self-reference?
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0
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8
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February 2, 2023
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Guidelines to use scanpy layers
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3
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80
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February 2, 2023
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Does processing the data always overwrite the raw counts?
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0
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7
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February 2, 2023
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Unstable result
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0
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8
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February 1, 2023
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Changing parameters in scanpy's scanpy._settings.ScanpyConfig
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0
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7
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February 1, 2023
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Show cluster numbers on scanpy UMAP plot like in Featureplot in Seurat
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3
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141
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January 30, 2023
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Transform_batch parameter of scVI's get_normalized_expression
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2
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51
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January 28, 2023
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Differential expression filtering in scVI
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0
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22
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January 26, 2023
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Log metrics from a Pyro model
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2
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15
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January 26, 2023
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Scanpy.external.tl.phenograph
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3
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33
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January 26, 2023
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Adata.obs entries for specific layers
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2
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63
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January 26, 2023
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Zstack with images having different sizes
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0
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15
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January 26, 2023
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Anndata.write fails with "object header message is too large"
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3
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155
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January 26, 2023
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totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data
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2
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186
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January 24, 2023
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Ambient RNA Filtering with scAR prior to scVI
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1
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51
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January 23, 2023
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Re-integrate after removing low-quality cells?
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2
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50
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January 23, 2023
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Best way to rank genes for GSEA analysis
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1
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40
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January 23, 2023
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Writing/reading scANVI model error?
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3
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35
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January 23, 2023
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How to handle data lognormalization when using highly_variable_genes() with flavor seurat_v3?
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1
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25
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January 23, 2023
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How to create a layer over a subset of .obs or .vars?
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1
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45
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January 20, 2023
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Multiple training sets with scVI?
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1
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41
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January 20, 2023
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Differential Expression using Scanpy
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1
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97
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January 18, 2023
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Silence verbose logging during scVI training
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0
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27
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January 18, 2023
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Error running ModelTuner.fit
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4
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67
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January 17, 2023
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Choosing a Dispersion Option in scvi Model Training
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0
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19
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January 17, 2023
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"Vanilla" vs "Change" Mode in Differential Expression
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2
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45
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January 17, 2023
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