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About the Help category
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0
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564
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March 4, 2022
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SpatialData workflow
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3
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39
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August 12, 2025
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Using ResolVI’s Unsupervised Mode for Cell Annotation
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6
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32
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August 7, 2025
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How to Correct for Intra-Organ Batch Effects Without Removing Inter-Organ Differences?
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6
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27
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August 5, 2025
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Can we use resolVI and squidpy to annotate a CosMX object based on a single cell reference?
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1
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31
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August 3, 2025
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Conduct SCANVI after running SysVI on multi-platform data
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3
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26
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August 3, 2025
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Anchor-based integration methods
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0
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9
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August 1, 2025
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How to filter out specific cell types in spatialdata similar to anndata?
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1
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60
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August 1, 2025
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Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)
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15
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215
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July 31, 2025
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Implementing Warmup to a component based on epoch
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2
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20
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July 31, 2025
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RESOLVI - continuous_covariate_keys
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0
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18
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July 24, 2025
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Error when trying to use scvi.model.SCANVI.from_scvi_model
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7
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242
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July 22, 2025
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multiVI speed and cpu consumption
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1
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25
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July 16, 2025
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How could `adata.raw.X` contain non-integer values?
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2
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51
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July 13, 2025
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Cell hashing analysis using muon
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1
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48
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July 12, 2025
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Problems with Bayes factors and LFC changes using model.differential_expression()
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8
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181
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July 9, 2025
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Wrong log-fold change estimation?
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3
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53
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July 9, 2025
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Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression
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2
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40
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July 10, 2025
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Does MultiVI support using tile matrix directly instead of peak calling for ATAC input?
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2
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35
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July 9, 2025
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DestVI.from_rna_model RuntimeError: Error(s) in loading state_dict for FCLayers
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1
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15
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July 9, 2025
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The best practice for detecting differential gene expression between 2 types of samples
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4
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900
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July 9, 2025
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Documentation for training with multiple GPUs
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5
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315
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July 9, 2025
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Scanpy write compression vs os compression
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1
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30
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June 28, 2025
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Shared cell types not mixing when integrating datasets from different species
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4
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70
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June 19, 2025
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Preprocess of scATAC use for peakVI or MultiVI
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2
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42
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June 19, 2025
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SMART-seq and MARS-seq pipelines
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1
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38
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June 19, 2025
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Workflow advice for totalVI in CITE-seq Multiplexed data
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3
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54
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June 19, 2025
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How can I change the color of the "groupby" labels from a dotplot?
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0
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25
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June 4, 2025
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Domain adaptation to pre-train batch correction model using paired data
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12
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114
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May 27, 2025
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Amortized LDA Topic Modeling - picking the right number of topics
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8
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113
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June 4, 2025
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