|
About the Help category
|
|
0
|
616
|
March 4, 2022
|
|
Aggregating ULM cell-type scores by cluster
|
|
0
|
9
|
August 26, 2026
|
|
Confused by percent_top purpose in scanpy.pp.calculate_qc_metrics
|
|
2
|
73
|
August 19, 2026
|
|
Spatial scatter "library_id" warning
|
|
0
|
14
|
August 19, 2026
|
|
How to install solo-sc or use hashsolo from scvi?
|
|
5
|
897
|
August 18, 2026
|
|
Can scVI take as input SCT-normalized data?
|
|
1
|
33
|
August 16, 2026
|
|
Squidpy calculations on giant data
|
|
0
|
72
|
August 4, 2026
|
|
Allowed downstream analysis with get_normalized_expression?
|
|
6
|
147
|
July 30, 2026
|
|
Help with cellrank2 macrostates (multiple conditions design)
|
|
4
|
101
|
July 17, 2026
|
|
Scanpy: use of layers
|
|
3
|
60
|
July 17, 2026
|
|
Within-individual DE/DA with MrVI
|
|
1
|
34
|
July 15, 2026
|
|
SCVI view_anndata_setup causes AttributeError with rich.pretty
|
|
1
|
37
|
July 8, 2026
|
|
mrVI and groupby=None
|
|
2
|
60
|
June 25, 2026
|
|
"sd.filter_by_table_query()" fails with "IndexError" on SpatialData 0.7.3 / AnnData 0.12.6
|
|
6
|
82
|
June 22, 2026
|
|
Hitting API rate limits with cell-annotator
|
|
0
|
36
|
June 11, 2026
|
|
Is squidpy co_occurrence metric symmetric?
|
|
1
|
105
|
June 10, 2026
|
|
CytoVI took more than 24 hours to train
|
|
6
|
263
|
June 10, 2026
|
|
Confusion on "no IR" definition in scirpy
|
|
2
|
58
|
May 26, 2026
|
|
Choosing number of latent variables
|
|
3
|
85
|
May 26, 2026
|
|
Multiple coordinate systems
|
|
2
|
59
|
May 26, 2026
|
|
Grouping/merging CosMx FOVs into cores in SpatialData
|
|
6
|
95
|
May 26, 2026
|
|
Unable to save subset spatialdata to zarr
|
|
1
|
47
|
May 21, 2026
|
|
Render_points super pixelized after subsetting SpatialData
|
|
2
|
56
|
May 21, 2026
|
|
Getting normalized expression
|
|
13
|
232
|
May 13, 2026
|
|
Using curated marker genes together with HVGs for scVI feature selection in adult skeletal muscle snRNA-seq
|
|
1
|
63
|
May 12, 2026
|
|
Using ResolVI’s Unsupervised Mode for Cell Annotation
|
|
9
|
673
|
May 7, 2026
|
|
Implementation of PROGENy pathway analysis
|
|
2
|
128
|
May 1, 2026
|
|
Integration challenges in a multi-dataset single cell type maturation atlas
|
|
2
|
82
|
April 24, 2026
|
|
MrVI input and interpretation
|
|
28
|
2074
|
April 23, 2026
|
|
ResolVI Corrected Counts for Segmented Visium HD Data
|
|
3
|
157
|
April 23, 2026
|