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About the Help category
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0
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582
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March 4, 2022
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Questions on Shapes + Tables vs single AnnData object
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6
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40
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December 11, 2025
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Issue with scVI VAE reconstruction: High sensitivity to library size and poor rank preservation
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1
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30
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December 9, 2025
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Issue with multiVI get_normalized_expression and get_normalized_accessibility
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5
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31
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December 7, 2025
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Scvi 1.4.0. model.differential_expression outputs
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1
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13
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December 7, 2025
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CellFlow as a training framework vs pretrained model
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1
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11
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December 5, 2025
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Draw_graph results in a cloud or nice PAGA-like structure depending on dataset?
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0
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8
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December 4, 2025
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Limited cell types in reference dataset for scANVI
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3
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20
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December 4, 2025
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Seeking guidance and reviewers for AnnData HTML representation PR (#2236)
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2
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16
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December 1, 2025
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Predict cell type with scANVI for spatial transcriptomics data (Xenium)
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6
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83
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November 27, 2025
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Corrected count for resolvi
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1
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27
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November 25, 2025
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Question about complex experiment
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1
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35
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November 25, 2025
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Loss_z1_weight and loss_z1_unweight in scANVI
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3
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489
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November 25, 2025
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Inquiry Regarding DRVI Model Compatibility with scANVI for Embedding Optimization?
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1
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23
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November 25, 2025
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Is squidpy co_occurrence metric symmetric?
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0
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21
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November 24, 2025
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CytoVI took more than 24 hours to train
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5
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43
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November 22, 2025
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Spatialdata.aggregate, image and segmentation_mask have different shape, but aligned in 'global'
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4
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108
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November 21, 2025
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.raw. car_names reassignation
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2
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17
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November 20, 2025
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Sc.tl.ingest over representing rare cell types in spatial transcriptomics data
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0
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21
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November 18, 2025
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Training not using the full GPU
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3
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55
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November 10, 2025
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Multi-threading support in decoupler
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0
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19
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November 10, 2025
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Impact of scaling on clustering results and controlling minimum cluster size in Leiden clustering
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1
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89
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November 10, 2025
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How should I process the data after removing low-quality cell clusters?
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0
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26
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November 9, 2025
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How to use totalVI denoised protein measurements
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1
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38
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November 9, 2025
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Rank_genes_groups expects log data but default to adata.raw, why?
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0
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29
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November 7, 2025
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Convert Scanpy (h5ad) to Seurat (rds)
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10
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17405
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November 6, 2025
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Question about get_normalized_expression computation
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3
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63
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November 5, 2025
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Batch key and categorical variables for get_normalized_expression()
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2
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81
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November 4, 2025
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Same scVI model with different values on mac silicon and linux?!
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1
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31
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November 4, 2025
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Question about implementation of highly_variable_genes
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0
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29
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November 3, 2025
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