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About the Help category
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0
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93
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March 4, 2022
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Leidenalg clustering error in Trajectory inference tutorial
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3
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14
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September 29, 2022
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Not able to load TCR data
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9
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20
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September 26, 2022
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Differential expression and highly variable genes
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0
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13
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September 26, 2022
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Using scrublet with pearson residuals method
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0
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11
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September 23, 2022
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Using scrublet with pearson residuals
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0
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12
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September 23, 2022
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How to set DataLoader(drop_last=True) for a model?
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3
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25
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September 21, 2022
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Error with sc.pp.highly_variable_genes, pp.highly_variable_genes` expects an `AnnData` argument
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0
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11
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September 21, 2022
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Progress not reporting loss from custom training plan
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2
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11
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September 21, 2022
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Difference between `TrainingPlan.log()` vs `TrainingPlan.compute_and_log_metrics()`?
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0
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7
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September 20, 2022
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Reset the default directory in scanpy.pl.umap(save)
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0
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7
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September 20, 2022
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Extracting Probability of Observation Matrix
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4
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167
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September 17, 2022
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Calls to decoder.forward() in VAE.generative() wrt the current DecoderSCVI API?
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0
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14
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September 15, 2022
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DE analysis with model.SCVI: which lfc indicates gene up-/down-regulation?
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2
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37
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September 15, 2022
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multiVI and totalVI modal integration question
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0
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22
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September 15, 2022
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How to isolate individual gene expression values within a cluster?
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3
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23
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September 14, 2022
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How to control axis test angle?
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0
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15
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September 14, 2022
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Motivation for `max_epochs = np.min([round((20000 / n_cells) * 400), 400])`?
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3
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31
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September 12, 2022
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TotalVI log normalization and non-negativity
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4
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89
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September 11, 2022
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Directly accessing scVI's decoder
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10
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350
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September 8, 2022
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Cell type labeling help
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3
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35
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September 6, 2022
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__init__() got an unexpected keyword argument 'location' Error
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2
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35
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September 2, 2022
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AnnData X memory layout
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6
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45
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August 29, 2022
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Scanvi from scvi model saved to file
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5
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39
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August 29, 2022
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How does one generate a DotPlot with scaled values?
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0
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24
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August 29, 2022
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`tests/models/test_pyro.py::test_pyro_bayesian_save_load` fails
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2
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27
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August 26, 2022
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Build model on normalised data
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1
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29
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August 26, 2022
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Error in scvi.model.TOTALVI.setup_anndata when loading protein-only data
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5
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29
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August 25, 2022
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Mapping a small reference dataset to a large dataset using scanpy ingest
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0
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21
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August 25, 2022
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How to find HVG in Seurat-integrated data?
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0
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18
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August 24, 2022
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