About the Help category
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0
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471
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March 4, 2022
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Insufficient batch correction for certain cell-types
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5
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32
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April 26, 2024
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Computing neighbors from X_scANVI representation
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5
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134
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April 26, 2024
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Early stopping debug
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1
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15
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April 26, 2024
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Benchmarking CellHint with scib-metrics Benchmarker tool how to use embedding_obsm_keys
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1
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35
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April 25, 2024
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Confused about hyperparam tuning in scVI
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1
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50
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April 25, 2024
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Scvi model training after sub-clustering
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1
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53
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April 25, 2024
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Computing sc.pp.neighbors without method?
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2
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267
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April 25, 2024
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How can I logarithmize the data for wilcoxon test?
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1
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24
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April 25, 2024
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scvi.model.SCVI input values
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1
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30
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April 23, 2024
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Does processing the data always overwrite the raw counts?
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3
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1428
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April 22, 2024
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Question about diffusion map "gaussian" implementation
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2
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191
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April 19, 2024
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SOLO/scVI .train() error related to batch_size?
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3
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638
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April 3, 2024
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How to add splice/unspliced layers to h5ad object
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0
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21
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April 20, 2024
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How to interpret Diffusion Maps?
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0
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39
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April 18, 2024
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Managing anndata with multiple features from each gene
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4
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42
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April 17, 2024
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How can I export list of genes and counts for each cluster from adata.raw?
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1
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84
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April 12, 2024
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Cannot load filtered_contig_annotations.csv
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1
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34
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April 12, 2024
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Change the font family for scanpy.pl in linux
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1
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50
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April 11, 2024
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Remove coordinate system from Spatialdata
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1
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41
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April 9, 2024
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Cell charter niche calling
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3
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52
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April 9, 2024
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Anndata.concat([a,b], join="inner") does not behave as a.concat(b)
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0
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34
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April 8, 2024
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Environment recipes for scVI autotune and scIB-metrics Benchmarker
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0
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53
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April 7, 2024
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Is anndata limited to 2d data?
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3
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266
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April 5, 2024
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Napari_spatialdata colouring cell_labels and plotting specific transcripts
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1
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62
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April 5, 2024
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scRNA-seq batch correction for DestVI
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2
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89
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April 3, 2024
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TCR and BCR genes and HVGs selection
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5
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92
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April 3, 2024
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Issues setting up anndata for SCVI
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2
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101
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April 2, 2024
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Differential expression genes: test to use?
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0
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70
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April 2, 2024
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Leiden clustering gives me different results when I run it
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1
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92
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April 1, 2024
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