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About the Help category
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0
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540
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March 4, 2022
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What training datasets are used in the scVI pretrained model (version 2024-07-01)?
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2
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3
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December 23, 2024
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Napari_spatialdata colouring cell_labels and plotting specific transcripts
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2
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170
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December 23, 2024
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Suggestions for training on xenium spatial transcriptomics dataset
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0
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6
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December 21, 2024
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Issue with model.train() in scVI - Training Stuck at 0%
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1
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13
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December 15, 2024
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Replicating data analysis using published pipeline
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0
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9
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December 10, 2024
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Train scVI on a sampled dataset
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8
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58
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December 6, 2024
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Psutil error when running sc.neighbors() in tutorial notebook
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0
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9
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December 5, 2024
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Error loading previously saved scVI model after updating packages / cloud environment
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6
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314
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December 5, 2024
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CUDA is available but Training scVI models is too slow
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4
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16
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December 4, 2024
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Difference between differentialy expressed genes and violin plot
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0
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19
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December 3, 2024
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10X data import, "No such file or directory: features.tsv.gz"
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0
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21
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November 29, 2024
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Tensor nan error when training scANVI model
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4
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636
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November 27, 2024
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`crop0(sdata).pl.render_labels` running too slow
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1
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17
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November 27, 2024
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What kind of data type does infercnvpy need as input?
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0
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4
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November 27, 2024
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scVI: effect of unbalanced number of cells in batches
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1
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22
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November 27, 2024
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GPU Utilization is 0 Despite JAX Occupying GPU Memory
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1
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29
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November 27, 2024
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Zero value with scvi normalisation
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1
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14
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November 27, 2024
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Getting the parameters and their names of scVI
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3
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370
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November 27, 2024
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Use a dictionnary with heatmaps
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0
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4
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November 25, 2024
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Loading Pre-Annotated Regions for Visium Analysis
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0
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6
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November 24, 2024
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Difference between tl.rank_genes_groups and pl.rank_genes_groups_heatmap
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0
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33
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November 20, 2024
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Xenium z-coord normalization
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1
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27
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November 19, 2024
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Scvi-tools: different DEGs when comparing same data
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2
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22
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November 19, 2024
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Error training MrVI: Backend 'cuda' failed to initialize
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2
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27
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November 18, 2024
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Dealing with multiple samples
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4
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423
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November 18, 2024
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How to best integrate scRNA-seq with transcription factor expression measured by fluorescent signals
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0
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15
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November 18, 2024
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Integrating different tissues with scVI
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3
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72
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November 15, 2024
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Import scirpy v0.19.0 failing due to numpy error
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2
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27
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November 12, 2024
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Integration with or without covariate
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1
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35
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November 11, 2024
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