|
About the Help category
|
|
0
|
591
|
March 4, 2022
|
|
Sc.pl.rank_genes_groups_heatmap - saving figure to file
|
|
1
|
22
|
March 13, 2026
|
|
Plotting the tangram imputed spatial data with spatialdata_plot
|
|
3
|
16
|
March 11, 2026
|
|
Macbook M1 M2 mps acceleration with scVI
|
|
10
|
2056
|
March 3, 2026
|
|
Regarding resolvi reproducibility scripts and fov for xenium
|
|
2
|
29
|
March 2, 2026
|
|
Is older advice for estimating optimal number of epochs for model training of scVI still recommended?
|
|
6
|
48
|
March 1, 2026
|
|
Ablating latent variables in LinearSCVI
|
|
5
|
148
|
February 24, 2026
|
|
Obs.perturbation and obs.gene in Replogle dataset
|
|
2
|
10
|
February 19, 2026
|
|
Can scCODA in pertpy be applied to compositional analysis of annotated spatial transcriptomics spots?
|
|
1
|
13
|
February 10, 2026
|
|
Scvi-tools not allowing me to download cellxgene census data
|
|
2
|
24
|
January 28, 2026
|
|
Does Decipher require cell type annotation
|
|
6
|
32
|
January 28, 2026
|
|
Best practices for downstream analysis of Resolvi-corrected data
|
|
2
|
122
|
January 27, 2026
|
|
Interpretting differential gene expression dotplot
|
|
0
|
22
|
January 23, 2026
|
|
When to use the batch_key in highly_variable_genes()
|
|
0
|
23
|
January 21, 2026
|
|
Invitation to Maintain Your Package in Claude Scientific Skills
|
|
2
|
18
|
January 28, 2026
|
|
Resolvi differential test does not converge (?)
|
|
5
|
57
|
January 15, 2026
|
|
Data scaling for cytovi
|
|
2
|
35
|
January 15, 2026
|
|
Imputation/Denoise output
|
|
1
|
25
|
January 15, 2026
|
|
SCANVI Model Loading Issue: Partial Data and Workaround
|
|
1
|
27
|
January 11, 2026
|
|
Error in training resolvi model
|
|
5
|
84
|
January 5, 2026
|
|
Predict cell type with scANVI for spatial transcriptomics data (Xenium)
|
|
7
|
275
|
December 28, 2025
|
|
Remove ribosomal genes driving variation (on PC plot)?
|
|
0
|
23
|
December 17, 2025
|
|
Sc.pp.filter_genes how to use
|
|
0
|
48
|
December 16, 2025
|
|
What is the context or history of having both inplace and copy args everywhere?
|
|
1
|
24
|
December 15, 2025
|
|
Questions on Shapes + Tables vs single AnnData object
|
|
6
|
90
|
December 11, 2025
|
|
Issue with scVI VAE reconstruction: High sensitivity to library size and poor rank preservation
|
|
1
|
85
|
December 9, 2025
|
|
Issue with multiVI get_normalized_expression and get_normalized_accessibility
|
|
5
|
107
|
December 7, 2025
|
|
Scvi 1.4.0. model.differential_expression outputs
|
|
1
|
48
|
December 7, 2025
|
|
CellFlow as a training framework vs pretrained model
|
|
1
|
24
|
December 5, 2025
|
|
Draw_graph results in a cloud or nice PAGA-like structure depending on dataset?
|
|
0
|
27
|
December 4, 2025
|