|
About the Help category
|
|
0
|
536
|
March 4, 2022
|
|
Difference between tl.rank_genes_groups and pl.rank_genes_groups_heatmap
|
|
0
|
9
|
November 20, 2024
|
|
Zero value with scvi normalisation
|
|
0
|
5
|
November 20, 2024
|
|
Xenium z-coord normalization
|
|
1
|
14
|
November 19, 2024
|
|
Scvi-tools: different DEGs when comparing same data
|
|
2
|
9
|
November 19, 2024
|
|
scVI: effect of unbalanced number of cells in batches
|
|
0
|
8
|
November 19, 2024
|
|
Error training MrVI: Backend 'cuda' failed to initialize
|
|
2
|
18
|
November 18, 2024
|
|
Dealing with multiple samples
|
|
4
|
378
|
November 18, 2024
|
|
How to best integrate scRNA-seq with transcription factor expression measured by fluorescent signals
|
|
0
|
10
|
November 18, 2024
|
|
Integrating different tissues with scVI
|
|
3
|
53
|
November 15, 2024
|
|
Import scirpy v0.19.0 failing due to numpy error
|
|
2
|
21
|
November 12, 2024
|
|
Integration with or without covariate
|
|
1
|
24
|
November 11, 2024
|
|
Installation of scirpy 0.11.1 fails due to parasail
|
|
2
|
12
|
November 9, 2024
|
|
GPU Utilization is 0 Despite JAX Occupying GPU Memory
|
|
0
|
16
|
November 8, 2024
|
|
scVI 21618 problem
|
|
5
|
194
|
November 7, 2024
|
|
Radial shape of cluster on UMAP, why?
|
|
0
|
17
|
November 7, 2024
|
|
Iteration consumes memory
|
|
5
|
33
|
November 7, 2024
|
|
Inconsistency of scvi/SOLO in predicting doublets?
|
|
5
|
26
|
November 7, 2024
|
|
Why totalvi can be used as denoising data?
|
|
1
|
11
|
November 7, 2024
|
|
NotImplementedError: Cannot create a view of an awkward array with __array__ parameter
|
|
9
|
28
|
November 6, 2024
|
|
Documentation for training with multiple GPUs
|
|
4
|
132
|
November 6, 2024
|
|
New scvi-tools version using SOLO returns probabilities, how to return logits like in version 1.1.2
|
|
7
|
79
|
July 2, 2024
|
|
Mu.pp.intersect_obs()
|
|
6
|
26
|
November 1, 2024
|
|
Tensor nan error when training scANVI model
|
|
1
|
613
|
October 30, 2024
|
|
Autotune failed due to "h5py objects cannot be pickled"
|
|
4
|
42
|
October 23, 2024
|
|
Fine-Tuning scVI Model
|
|
2
|
46
|
October 23, 2024
|
|
`ir.tl.chain_qc(adata)` error message with scirpy 0.18.0
|
|
3
|
12
|
October 17, 2024
|
|
Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI
|
|
8
|
81
|
October 17, 2024
|
|
Train scVI on a sampled dataset
|
|
5
|
40
|
October 17, 2024
|
|
SCANVI inferred cell types don't make sense
|
|
1
|
34
|
October 17, 2024
|