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About the Help category
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0
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545
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March 4, 2022
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Good spatial tutorial for beginners
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0
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7
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February 21, 2025
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Differential Expression and Batch Correction
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1
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36
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February 20, 2025
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Add new data to existing integration
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1
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9
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February 20, 2025
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SOLO/scVI .train() error related to batch_size?
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6
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1177
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February 20, 2025
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scVelo between conditions
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0
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3
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February 20, 2025
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How to transfer annotation from cell subset to original object?
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0
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8
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February 18, 2025
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How to plot annotation in Xenium data using spatialdata
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7
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34
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February 16, 2025
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Really hard to plot categories palette
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1
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20
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February 14, 2025
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Help with harmony and scanpy
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3
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54
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February 14, 2025
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I have always had a question: do I need to scale my adata before running sc.tl.score_genes?
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4
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432
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February 14, 2025
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Pertpy: AttributeError: module 'pertpy.plot' has no attribute 'coda'
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5
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593
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February 14, 2025
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Dealing with multiple samples
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9
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492
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February 13, 2025
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Question about interpreting the DEGs associated with disease changes using MrVI
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2
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26
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February 11, 2025
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Ablating latent variables in LinearSCVI
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3
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27
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February 6, 2025
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Weird output combat integration two datasets
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2
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20
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February 6, 2025
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TotalVI not fully integrating CITEseq cells with GEX and missing protein values
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1
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17
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February 6, 2025
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How to deal with negative logfoldchange in dotplot
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0
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14
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February 6, 2025
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Lazy loading of Zarr from S3
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3
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19
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January 30, 2025
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Differential gene expression shows very low raw_means
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2
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25
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January 30, 2025
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The mean of the the scVI ZINB model distribution (related to supplementary note 3)
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4
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29
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January 29, 2025
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Tensor nan error when training scANVI model
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6
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681
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January 29, 2025
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How to appropriately transfer annotations from anndata to seurat
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2
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63
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January 24, 2025
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Best practice for handling custom points during SCVI training
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4
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43
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January 24, 2025
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Any MLX (MPS) framework accelerate solution for scanpy？
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0
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23
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January 23, 2025
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Integrating TRUST4 outputs into anndata GEX
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3
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25
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January 22, 2025
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Cell hashing analysis using muon
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0
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18
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January 21, 2025
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Workflow to integrate dataset from two different species
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1
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53
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January 21, 2025
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Scvi embedding from Census API by CellxGene
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1
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18
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January 20, 2025
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Cropping spatialdata to extent of shapes
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2
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28
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January 20, 2025
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