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About the Help category
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0
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531
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March 4, 2022
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P-values for scanpy.tl.rank_genes_groups
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0
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5
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July 26, 2024
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MrVI input and interpretation
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21
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959
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July 25, 2024
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Benchmarking with scib-metrics: Graph Connectivity as a batch correction metric
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5
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25
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July 25, 2024
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Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI
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1
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5
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July 25, 2024
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Sc.pl.umap scales
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0
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4
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July 24, 2024
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I have always had a question: do I need to scale my adata before running sc.tl.score_genes?
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2
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72
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July 24, 2024
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WNN neighborhood graph construction failing
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1
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180
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July 23, 2024
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How can I load an anndata object when 'raw' was saved as a dictionary
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1
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28
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July 23, 2024
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How to subset anndata variables, but still store the removed variables elsewhere for downstream analysis?
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1
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12
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July 23, 2024
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Do I need to scale my adata before running sc.tl.score_genes?
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2
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81
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July 23, 2024
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Some default parameter annotations in API are confusing
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2
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29
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July 23, 2024
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Batch correction on different conditions
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1
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14
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July 23, 2024
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AdversarialTrainingPlan in _trainingplans.py
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1
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5
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July 23, 2024
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Different UMAPs for same dataset with scANVI
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6
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25
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July 22, 2024
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Differences in library sizes between reference and query
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3
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11
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July 22, 2024
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Integration with multiple categorical variable
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1
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7
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July 22, 2024
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Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix'
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4
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24
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July 21, 2024
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MrVI min cells per sample, cross tissue samples
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1
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14
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July 20, 2024
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Multithreading error
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1
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19
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July 16, 2024
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Error with DefaultAssay in R when Integrating Data Using scvi-tools
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4
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61
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July 16, 2024
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Scanpy.tl.rank_genes_groups with wilcoxon returns same score for multiple genes
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0
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17
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July 15, 2024
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Error when trying to use scvi.model.SCANVI.from_scvi_model
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2
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93
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July 12, 2024
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TypeError with ir.tl.define_clonotype_clusters
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3
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19
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July 9, 2024
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Any suggestions for speeding up model training (vae and solo) on M2 mac
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1
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41
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July 8, 2024
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Scvi - denoising single-cell/single-nucleus transcription data
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1
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53
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July 5, 2024
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Recommendation for transform_batch / categorical_covariate_keys to obtain "batch corrected" counts
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1
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56
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July 3, 2024
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[moved] How to align image to cropped data, visualize with Xenium Explorer
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1
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34
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July 2, 2024
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New scvi-tools version using SOLO returns probabilities, how to return logits like in version 1.1.2
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7
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59
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July 2, 2024
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N_samples ( refers to Monte Carlo sampling for each cell) setting in totalVI
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1
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51
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June 28, 2024
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