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About the Help category
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0
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577
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March 4, 2022
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Question about complex experiment
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0
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8
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November 14, 2025
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Training not using the full GPU
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3
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26
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November 10, 2025
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Multi-threading support in decoupler
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0
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10
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November 10, 2025
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Impact of scaling on clustering results and controlling minimum cluster size in Leiden clustering
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1
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22
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November 10, 2025
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Spatialdata.aggregate, image and segmentation_mask have different shape, but aligned in 'global'
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3
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70
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November 10, 2025
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How should I process the data after removing low-quality cell clusters?
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0
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12
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November 9, 2025
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How to use totalVI denoised protein measurements
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1
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21
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November 9, 2025
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Rank_genes_groups expects log data but default to adata.raw, why?
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0
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12
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November 7, 2025
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Convert Scanpy (h5ad) to Seurat (rds)
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10
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17145
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November 6, 2025
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Question about get_normalized_expression computation
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3
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47
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November 5, 2025
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Batch key and categorical variables for get_normalized_expression()
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2
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64
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November 4, 2025
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Same scVI model with different values on mac silicon and linux?!
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1
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21
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November 4, 2025
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Question about implementation of highly_variable_genes
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0
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17
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November 3, 2025
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Calculate gene signature scores from cell2location-deconvolved spatial transcriptomics
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0
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14
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October 22, 2025
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Pathway quantification with decoupler - questions on the possible inputs
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3
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44
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October 22, 2025
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Excluding Ig and ribosomal genes from HVG selection in scVI, best practice?
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1
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53
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October 22, 2025
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Potential bug in scvi.model.TOTALVI.setup_mudata
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2
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36
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October 10, 2025
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Changing the order of the anndata objects in anndata.concat changes the leiden clustering
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6
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64
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October 9, 2025
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Loss_z1_weight and loss_z1_unweight in scANVI
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2
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481
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October 8, 2025
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Infercnvpy | get positional information for bins
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0
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23
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October 7, 2025
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Help with package setup
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2
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34
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October 7, 2025
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How to use scib benchmark-metrics evaluate the adata after BBKNN integretion
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3
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35
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October 7, 2025
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Questions on Shapes + Tables vs single AnnData object
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5
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31
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October 2, 2025
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Is Gaussian mixture VAE implemented in scVI-tools?
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3
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52
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September 25, 2025
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Anchor-based integration methods
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1
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38
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September 25, 2025
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Posterior probability interpretability (soft=True)
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1
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41
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September 25, 2025
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Cell charter niche calling
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5
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267
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September 13, 2025
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Preprocess of scATAC use for peakVI or MultiVII
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2
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16
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September 16, 2025
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Preprocess of scATAC use for peakVI or MultiVI
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5
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124
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September 3, 2025
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