About the Help category
|
|
0
|
541
|
March 4, 2022
|
How to appropriately transfer annotations from anndata to seurat
|
|
2
|
3
|
January 24, 2025
|
Best practice for handling custom points during SCVI training
|
|
4
|
29
|
January 24, 2025
|
Lazy loading of Zarr from S3
|
|
2
|
10
|
January 23, 2025
|
Any MLX (MPS) framework accelerate solution for scanpy?
|
|
0
|
5
|
January 23, 2025
|
Integrating TRUST4 outputs into anndata GEX
|
|
3
|
19
|
January 22, 2025
|
Cell hashing analysis using muon
|
|
0
|
6
|
January 21, 2025
|
Workflow to integrate dataset from two different species
|
|
1
|
25
|
January 21, 2025
|
Scvi embedding from Census API by CellxGene
|
|
1
|
10
|
January 20, 2025
|
Dealing with multiple samples
|
|
8
|
457
|
January 20, 2025
|
Cropping spatialdata to extent of shapes
|
|
2
|
10
|
January 20, 2025
|
How to convert R matrix to anndata
|
|
4
|
35
|
January 17, 2025
|
Using squidpy following scRNAseq and spatialRNASeq integration with scanorama and scanpy
|
|
0
|
12
|
January 17, 2025
|
Model cannot be initialized and return error
|
|
6
|
42
|
January 15, 2025
|
Error loading someone else's SCVI model: no such file (attr.pkl)
|
|
1
|
14
|
January 13, 2025
|
Impact of batch on TotalVI results
|
|
1
|
35
|
January 5, 2025
|
Differential expression analysis
|
|
4
|
607
|
January 5, 2025
|
Napari_spatialdata colouring cell_labels and plotting specific transcripts
|
|
3
|
179
|
December 28, 2024
|
What training datasets are used in the scVI pretrained model (version 2024-07-01)?
|
|
2
|
39
|
December 23, 2024
|
Suggestions for training on xenium spatial transcriptomics dataset
|
|
0
|
31
|
December 21, 2024
|
Issue with model.train() in scVI - Training Stuck at 0%
|
|
1
|
31
|
December 15, 2024
|
Replicating data analysis using published pipeline
|
|
0
|
20
|
December 10, 2024
|
Train scVI on a sampled dataset
|
|
8
|
71
|
December 6, 2024
|
Psutil error when running sc.neighbors() in tutorial notebook
|
|
0
|
15
|
December 5, 2024
|
Error loading previously saved scVI model after updating packages / cloud environment
|
|
6
|
356
|
December 5, 2024
|
CUDA is available but Training scVI models is too slow
|
|
4
|
38
|
December 4, 2024
|
Difference between differentialy expressed genes and violin plot
|
|
0
|
28
|
December 3, 2024
|
10X data import, "No such file or directory: features.tsv.gz"
|
|
0
|
35
|
November 29, 2024
|
Tensor nan error when training scANVI model
|
|
4
|
651
|
November 27, 2024
|
`crop0(sdata).pl.render_labels` running too slow
|
|
1
|
20
|
November 27, 2024
|