|
About the Help category
|
|
0
|
582
|
March 4, 2022
|
|
Error in training resolvi model
|
|
0
|
1
|
December 24, 2025
|
|
Remove ribosomal genes driving variation (on PC plot)?
|
|
0
|
8
|
December 17, 2025
|
|
Sc.pp.filter_genes how to use
|
|
0
|
10
|
December 16, 2025
|
|
What is the context or history of having both inplace and copy args everywhere?
|
|
1
|
7
|
December 15, 2025
|
|
Questions on Shapes + Tables vs single AnnData object
|
|
6
|
49
|
December 11, 2025
|
|
Issue with scVI VAE reconstruction: High sensitivity to library size and poor rank preservation
|
|
1
|
40
|
December 9, 2025
|
|
Issue with multiVI get_normalized_expression and get_normalized_accessibility
|
|
5
|
37
|
December 7, 2025
|
|
Scvi 1.4.0. model.differential_expression outputs
|
|
1
|
15
|
December 7, 2025
|
|
CellFlow as a training framework vs pretrained model
|
|
1
|
15
|
December 5, 2025
|
|
Draw_graph results in a cloud or nice PAGA-like structure depending on dataset?
|
|
0
|
13
|
December 4, 2025
|
|
Limited cell types in reference dataset for scANVI
|
|
3
|
23
|
December 4, 2025
|
|
Seeking guidance and reviewers for AnnData HTML representation PR (#2236)
|
|
2
|
16
|
December 1, 2025
|
|
Predict cell type with scANVI for spatial transcriptomics data (Xenium)
|
|
6
|
100
|
November 27, 2025
|
|
Corrected count for resolvi
|
|
1
|
36
|
November 25, 2025
|
|
Question about complex experiment
|
|
1
|
45
|
November 25, 2025
|
|
Loss_z1_weight and loss_z1_unweight in scANVI
|
|
3
|
490
|
November 25, 2025
|
|
Inquiry Regarding DRVI Model Compatibility with scANVI for Embedding Optimization?
|
|
1
|
36
|
November 25, 2025
|
|
Is squidpy co_occurrence metric symmetric?
|
|
0
|
26
|
November 24, 2025
|
|
CytoVI took more than 24 hours to train
|
|
5
|
47
|
November 22, 2025
|
|
Spatialdata.aggregate, image and segmentation_mask have different shape, but aligned in 'global'
|
|
4
|
110
|
November 21, 2025
|
|
.raw. car_names reassignation
|
|
2
|
17
|
November 20, 2025
|
|
Sc.tl.ingest over representing rare cell types in spatial transcriptomics data
|
|
0
|
26
|
November 18, 2025
|
|
Training not using the full GPU
|
|
3
|
55
|
November 10, 2025
|
|
Multi-threading support in decoupler
|
|
0
|
19
|
November 10, 2025
|
|
Impact of scaling on clustering results and controlling minimum cluster size in Leiden clustering
|
|
1
|
91
|
November 10, 2025
|
|
How should I process the data after removing low-quality cell clusters?
|
|
0
|
26
|
November 9, 2025
|
|
How to use totalVI denoised protein measurements
|
|
1
|
38
|
November 9, 2025
|
|
Rank_genes_groups expects log data but default to adata.raw, why?
|
|
0
|
32
|
November 7, 2025
|
|
Convert Scanpy (h5ad) to Seurat (rds)
|
|
10
|
17503
|
November 6, 2025
|