About the Help category
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0
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556
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March 4, 2022
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Modify gene identifiers stored in existing scVI model
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1
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11
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April 20, 2025
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Anndata Manager Store
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11
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25
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April 20, 2025
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Scvi package can't be installed into google colab?
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6
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12
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April 20, 2025
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How to retreive the V,D,J gene segment idenifiers and CD3 sequence give a clone_id?
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1
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5
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April 18, 2025
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Workflow advice for totalVI in CITE-seq Multiplexed data
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1
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6
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April 17, 2025
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Is the scVI model applicable to bulk RNA-seq data from cell lines?
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1
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9
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April 16, 2025
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Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)
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5
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34
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April 16, 2025
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Problems with Bayes factors and LFC changes using model.differential_expression()
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2
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24
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April 14, 2025
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Memory Usage in multiple New Formats
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0
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13
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April 13, 2025
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Best Practices for Multi-Panel Figures
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0
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13
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April 11, 2025
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Unexplained change in UMAP
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0
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15
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April 11, 2025
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Lazy Loading Anndata backed in Zarr Arrays from Disk
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4
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42
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April 11, 2025
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How to transfer annotation from cell subset to original object?
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1
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26
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April 10, 2025
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How to plot annotation in Xenium data using spatialdata
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8
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68
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April 10, 2025
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How should I calculate the knn entropy using the leiden clusters?
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1
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13
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April 10, 2025
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Understanding scVI integration inside R with Seurat v5 & SCTransform
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1
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48
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April 6, 2025
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How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)?
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8
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34
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April 10, 2025
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Stacked violin API related question
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2
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349
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April 1, 2025
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Any MLX (MPS) framework accelerate solution for scanpy?
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1
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40
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March 31, 2025
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How to filter out specific cell types in spatialdata similar to anndata?
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0
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22
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March 27, 2025
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Getting the same values to have the same colors across multiple plots of spatial_segment?
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0
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8
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March 24, 2025
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inferCNVpy after running scVI with batch as key
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5
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716
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March 24, 2025
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Suggestions for training on xenium spatial transcriptomics dataset
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5
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119
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March 22, 2025
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How to generate continuous colormap to plot the (co-)expression of multiple genes
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0
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13
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March 20, 2025
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Error when running scvi.data.add_dna_sequence
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1
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36
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March 18, 2025
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Scvi-tools solo return synthetic doublets
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3
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22
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March 18, 2025
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SysVI model and normalized expression
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1
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47
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March 15, 2025
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Scvi-tools and xenium
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7
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304
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March 13, 2025
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Unexpected exception formatting exception when prepare_query_anndata
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4
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41
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March 11, 2025
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