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About the Help category
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0
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37
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March 4, 2022
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What model to use when integrating batches of scRNA-seq matrices containing >150,000 T and innate lymphoid cell (ILC) sub-populations
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5
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18
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May 17, 2022
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SCANVI: Label transfer from adult to embryonic data?
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1
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11
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May 17, 2022
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Convert Scanpy (h5ad) to Seurat (rds)
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4
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14
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May 17, 2022
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How to make the union set of 2 scRNA-seq matrix?
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2
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21
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May 16, 2022
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Consistent results when using scvi.model.SCVI
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3
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19
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May 11, 2022
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[AnnData] Lazily create .obsm on disk
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4
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26
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May 10, 2022
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scvi.model.SCVI for DE gene anlaysis
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1
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49
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May 8, 2022
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Dense matrix datasets
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3
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18
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May 6, 2022
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Spatial datasets integration
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0
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21
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May 5, 2022
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Influence of different reference genomes used for mapping
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0
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11
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May 4, 2022
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Negative binomial regression on numerical variables
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0
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11
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May 3, 2022
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Semi supervised integration update
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2
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21
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May 3, 2022
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What was the basis for parameter choices in tutorials?
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1
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70
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April 29, 2022
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Outlier Detection PCA / Clustering
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2
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51
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April 28, 2022
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Sc.pp.neighbours not always getting requested n_neighbors = 5
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1
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23
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April 27, 2022
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TotalVI- ADT filtering and zero value markers
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0
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25
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April 26, 2022
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TotalVI log normalization and non-negativity
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2
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25
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April 25, 2022
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Rank gene scores
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0
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28
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April 25, 2022
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Distances -> connectivities in neighbor graph construction
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3
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59
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April 22, 2022
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Unbalanced cell types and transform_batch
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3
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63
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April 22, 2022
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DE analysis between two batch-specific clusters
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4
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68
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April 22, 2022
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SCANVI: Label transfer from in vivo reference to in vitro model?
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2
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33
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April 21, 2022
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Store data as sparse matrix
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3
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38
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April 19, 2022
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Should do normalize before integration?
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1
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69
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April 14, 2022
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Creating an atlas for online updating / architectural surgury using scANVI and partially labelled data
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1
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35
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April 14, 2022
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What kind of object does `scanpy.external.pp.magic` return?
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5
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56
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April 13, 2022
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Concat anndata objects on disk
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1
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66
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April 12, 2022
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Time point specific batch correction
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5
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70
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April 3, 2022
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All genes or highly variable genes?
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10
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175
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March 31, 2022
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