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About the scanpy category
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0
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557
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March 4, 2022
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Help with harmony and scanpy
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3
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54
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February 14, 2025
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Weird output combat integration two datasets
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2
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20
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February 6, 2025
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How to deal with negative logfoldchange in dotplot
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0
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14
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February 6, 2025
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Any MLX (MPS) framework accelerate solution for scanpy？
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0
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23
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January 23, 2025
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Replicating data analysis using published pipeline
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0
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27
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December 10, 2024
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Psutil error when running sc.neighbors() in tutorial notebook
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0
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16
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December 5, 2024
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Difference between differentialy expressed genes and violin plot
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0
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32
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December 3, 2024
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10X data import, "No such file or directory: features.tsv.gz"
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0
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52
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November 29, 2024
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Use a dictionnary with heatmaps
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0
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9
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November 25, 2024
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Difference between tl.rank_genes_groups and pl.rank_genes_groups_heatmap
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0
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60
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November 20, 2024
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Radial shape of cluster on UMAP, why?
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0
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58
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November 7, 2024
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Scanpy.pl.rank_genes_groups_dotplot doesn't plot gene symbols in adata.var_names
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0
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72
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September 30, 2024
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Sc.pp.regress_out() with large datasets
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0
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77
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September 19, 2024
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Split dotplot by condition
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0
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52
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September 12, 2024
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Trouble Making a Z-Score Heatmap
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2
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1006
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September 11, 2024
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Loosing anndata .var layer when using sc.concat?
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3
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939
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September 9, 2024
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Changing color/size of textfont with sc.pl.umap
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2
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220
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September 4, 2024
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Understanding the behaviour of sc.pp.highly_variable_genes with a batch_key and different values of n_top_genes
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1
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98
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August 15, 2024
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Sc.pl.umap scales
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1
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61
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July 30, 2024
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P-values for scanpy.tl.rank_genes_groups
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1
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107
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July 30, 2024
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Stannotation with scanpy and seaborn
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0
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38
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July 30, 2024
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Do I need to scale my adata before running sc.tl.score_genes?
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2
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137
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July 23, 2024
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Some default parameter annotations in API are confusing
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2
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46
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July 23, 2024
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Scanpy.tl.rank_genes_groups with wilcoxon returns same score for multiple genes
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0
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159
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July 15, 2024
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UMAP plot colors problem
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2
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507
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June 6, 2024
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How to find DE genes between different datasets?
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1
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231
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May 22, 2024
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Var_names_make_unique()
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1
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863
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May 9, 2024
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Subsetting anndata is causing error problems
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3
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678
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May 5, 2024
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Subsetting/Re-normalization issue
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1
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246
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April 30, 2024
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