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About the scanpy category
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0
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584
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March 4, 2022
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Impact of scaling on clustering results and controlling minimum cluster size in Leiden clustering
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1
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21
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November 10, 2025
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How should I process the data after removing low-quality cell clusters?
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0
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11
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November 9, 2025
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Rank_genes_groups expects log data but default to adata.raw, why?
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0
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12
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November 7, 2025
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Question about implementation of highly_variable_genes
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0
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17
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November 3, 2025
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Posterior probability interpretability (soft=True)
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1
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41
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September 25, 2025
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How could `adata.raw.X` contain non-integer values?
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2
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116
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July 13, 2025
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Scanpy write compression vs os compression
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1
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57
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June 28, 2025
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How can I change the color of the "groupby" labels from a dotplot?
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0
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41
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June 4, 2025
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Unexplained change in UMAP
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3
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174
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May 27, 2025
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Sc.pp.highly_variable_genes with batch_key causes segmentation fault
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2
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235
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May 26, 2025
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Best Practices for Multi-Panel Figures
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0
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62
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April 11, 2025
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Stacked violin API related question
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2
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397
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April 1, 2025
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Any MLX (MPS) framework accelerate solution for scanpy？
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1
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93
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March 31, 2025
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Split dotplot by condition
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2
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168
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March 3, 2025
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Rank_genes_groups pts and DE
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0
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215
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February 27, 2025
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Reg negative and positive TF activity values
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0
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30
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February 24, 2025
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Help with harmony and scanpy
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3
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711
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February 14, 2025
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Weird output combat integration two datasets
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2
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69
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February 6, 2025
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How to deal with negative logfoldchange in dotplot
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0
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55
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February 6, 2025
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Replicating data analysis using published pipeline
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0
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48
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December 10, 2024
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Psutil error when running sc.neighbors() in tutorial notebook
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0
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33
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December 5, 2024
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Difference between differentialy expressed genes and violin plot
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0
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53
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December 3, 2024
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10X data import, "No such file or directory: features.tsv.gz"
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0
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98
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November 29, 2024
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Use a dictionnary with heatmaps
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0
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35
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November 25, 2024
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Difference between tl.rank_genes_groups and pl.rank_genes_groups_heatmap
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0
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215
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November 20, 2024
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Radial shape of cluster on UMAP, why?
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0
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170
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November 7, 2024
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Scanpy.pl.rank_genes_groups_dotplot doesn't plot gene symbols in adata.var_names
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0
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175
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September 30, 2024
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Sc.pp.regress_out() with large datasets
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0
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168
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September 19, 2024
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Trouble Making a Z-Score Heatmap
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2
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1235
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September 11, 2024
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