|
About the scanpy category
|
|
0
|
96
|
March 4, 2022
|
|
Leidenalg clustering error in Trajectory inference tutorial
|
|
3
|
23
|
September 29, 2022
|
|
Using scrublet with pearson residuals method
|
|
0
|
15
|
September 23, 2022
|
|
Using scrublet with pearson residuals
|
|
0
|
15
|
September 23, 2022
|
|
Error with sc.pp.highly_variable_genes, pp.highly_variable_genes` expects an `AnnData` argument
|
|
0
|
16
|
September 21, 2022
|
|
Reset the default directory in scanpy.pl.umap(save)
|
|
0
|
10
|
September 20, 2022
|
|
How to control axis test angle?
|
|
0
|
16
|
September 14, 2022
|
|
How does one generate a DotPlot with scaled values?
|
|
0
|
27
|
August 29, 2022
|
|
How to find HVG in Seurat-integrated data?
|
|
0
|
21
|
August 24, 2022
|
|
Merged adata with different dimension but getting stuck at PCA
|
|
0
|
33
|
August 22, 2022
|
|
Module 'scanpy' has no attribute 'read_10X_mtx'
|
|
1
|
52
|
August 5, 2022
|
|
ValueError: `X_pca` does not have enough PCs. Rerun `sc.pp.pca` with adjusted `n_comps`
|
|
1
|
40
|
August 5, 2022
|
|
Name 'qc_vars' is not defined: how to trouble shoot, help?
|
|
1
|
32
|
August 5, 2022
|
|
Does AnnData read cell (column) by genes (rows) or the other way around?
|
|
2
|
37
|
August 5, 2022
|
|
Space between each "groupby" group in sc.pl.heatmap?
|
|
1
|
50
|
August 4, 2022
|
|
Loading of transposed count matrix
|
|
3
|
50
|
August 4, 2022
|
|
Difference between n_genes and n_genes_by_counts?
|
|
1
|
79
|
August 4, 2022
|
|
Add title to scanpy.pl.heatmap
|
|
2
|
50
|
July 29, 2022
|
|
How to change the axis limits in scanpy for violin plots
|
|
1
|
53
|
July 22, 2022
|
|
Diffmap DPT question
|
|
3
|
128
|
July 17, 2022
|
|
Read csv error - cannot convert string to float
|
|
0
|
42
|
July 12, 2022
|
|
Force-directed graph and root
|
|
3
|
62
|
July 9, 2022
|
|
How do I get a list (NOT plot/figure/pdf) of highest expressed genes in scanpy?
|
|
3
|
74
|
July 8, 2022
|
|
How to decide the number of Optimal clusters while clustering the subtypes of cells
|
|
1
|
75
|
July 8, 2022
|
|
Error scanpy pbmc data
|
|
3
|
65
|
June 29, 2022
|
|
scanpy.pp.highly_variable_genes and “raise KeyError”
|
|
0
|
65
|
June 28, 2022
|
|
Plotting UMAPS For Multiple .mtx Files Overlayed
|
|
2
|
49
|
June 27, 2022
|
|
Tl.ingest not working (`sca.datasets` MWE)
|
|
2
|
55
|
June 21, 2022
|
|
Subset AnnData object based on categorical value: AttributeError: 'AnnData' object has no attribute '_X'
|
|
1
|
150
|
June 17, 2022
|
|
Stacked violin API related question
|
|
0
|
43
|
June 15, 2022
|