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About the scanpy category
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0
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139
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March 4, 2022
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Correct use of .copy() when working with layers
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0
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9
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February 2, 2023
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Guidelines to use scanpy layers
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3
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80
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February 2, 2023
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Does processing the data always overwrite the raw counts?
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0
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7
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February 2, 2023
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Changing parameters in scanpy's scanpy._settings.ScanpyConfig
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0
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7
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February 1, 2023
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Show cluster numbers on scanpy UMAP plot like in Featureplot in Seurat
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3
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141
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January 30, 2023
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Scanpy.external.tl.phenograph
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3
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33
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January 26, 2023
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How to handle data lognormalization when using highly_variable_genes() with flavor seurat_v3?
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1
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25
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January 23, 2023
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Differential Expression using Scanpy
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1
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97
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January 18, 2023
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Scanpy equivalent of Seurat's ScaleData()
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1
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69
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January 16, 2023
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Issue reading h5ad file
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1
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58
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January 12, 2023
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Issue with logfoldchanges in scanpy.tl.rank_genes_groups
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0
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35
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January 11, 2023
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How does scanpy work for mixed species single cell RNAseq data from 10x? What is the best way to look at one specific species from that dataset?
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1
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27
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January 6, 2023
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Sc.pl.heatmap ,clusters, ascending order
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0
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31
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January 3, 2023
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Which is the best method to compare the differently expressed genes between 2 clusters `sc.tl.rank_genes_groups` or `MAST.zlm`?
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0
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38
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January 1, 2023
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Scanpy.tl.rank_genes_groups, layer= does not appear to be working
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1
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53
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December 31, 2022
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Problem with PAGA graph plotting
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0
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51
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December 14, 2022
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Problem after igraph installation
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1
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45
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November 23, 2022
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Marker gene selection: rank_marker_genes vs diffxpy
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0
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49
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November 17, 2022
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Re-Clustering Clusters of Anndata
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2
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140
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November 8, 2022
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Scanpy readthedocs
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0
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54
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November 7, 2022
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Plotting scanpy.tl.score_genes() value using scanpy.pl.stacked_violin()
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1
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47
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November 4, 2022
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Differential expression in Scanpy
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0
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60
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November 4, 2022
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Scanpy.external.pp.bbknn add feature key_added
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0
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45
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November 3, 2022
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Regressing out variables in pearson residual normalization
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0
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49
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November 3, 2022
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How to quantify cell type using scanpy?
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2
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131
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October 31, 2022
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Sc.external.pp.scrublet vs snap.pl.scrublet
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2
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67
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October 26, 2022
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Random umap and clustering resullt
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4
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73
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October 25, 2022
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Displace cluster names when legend_loc="on data"
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1
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64
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October 25, 2022
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Calculating enrichment for a list of genes (signature) for clusters of cells
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2
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67
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October 19, 2022
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