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About the scanpy category
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0
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470
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March 4, 2022
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How to interpret Diffusion Maps?
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0
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12
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April 18, 2024
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How can I export list of genes and counts for each cluster from adata.raw?
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1
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66
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April 12, 2024
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Change the font family for scanpy.pl in linux
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1
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38
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April 11, 2024
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TCR and BCR genes and HVGs selection
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5
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82
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April 3, 2024
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Differential expression genes: test to use?
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0
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55
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April 2, 2024
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Leiden clustering gives me different results when I run it
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1
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86
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April 1, 2024
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Does Scanpy stores raw count as int or float?
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1
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68
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March 25, 2024
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Sc.pl.draw_graph
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1
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88
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March 19, 2024
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Normalized data found instead of raw counts
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2
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141
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March 18, 2024
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Sc.pl.draw_graph is strongly affected by the outliers
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0
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54
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March 18, 2024
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How to reuse cmap for other plots?
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3
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96
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March 9, 2024
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How to get dot values from `sc.pl.dotplot()`?
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1
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137
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March 1, 2024
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Remove genes from highly variable genes
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1
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172
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February 21, 2024
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Converting tab-delimited files to adata in a memory-efficient way
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3
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92
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February 21, 2024
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ModuleNotFoundErrror: no module named "importlib.metadata"
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4
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589
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February 15, 2024
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Error with cyclone ['DataFrame' object has no attribute 'iteritems' ]
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0
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95
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February 12, 2024
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Subsetting/Re-normalization issue
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0
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105
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February 5, 2024
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Plots shifted when using scanpy in R markdown
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0
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54
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February 1, 2024
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Trying to read custom genome using sc.read_10x_h5
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0
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97
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January 26, 2024
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Heatmap cannot be assigned as a subplot
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1
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144
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January 16, 2024
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Umap shapes different for the same dataset
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1
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107
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January 15, 2024
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Mismatch between MAST DE results and dotplot
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0
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65
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January 9, 2024
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Pl.dotplot : legend(mean expression in group) number is so large
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1
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224
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January 9, 2024
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Option to plot separate umaps for concatenated datasets
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4
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206
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December 27, 2023
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Weird oval umap cluster
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0
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106
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December 25, 2023
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Sc.pp.highly_variable_genes with batch_key causes segmentation fault
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0
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85
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December 24, 2023
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Differential gene expression - normalize gene values?
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0
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117
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December 6, 2023
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Error when saving adata with adata.write_h5ad(): "Above error raised while writing key 'names' of to /"
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2
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939
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December 3, 2023
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UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored
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8
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5939
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December 1, 2023
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