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About the scanpy category
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0
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238
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March 4, 2022
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Current status of dask support (and on disk sparse arrays)
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1
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32
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May 25, 2023
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Add new gene/var to scanpy object
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0
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12
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May 25, 2023
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HVG selection 'flavors'
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1
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59
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May 25, 2023
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Help concatenating var for cite seq
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2
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42
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May 24, 2023
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Read_10x_h5 Error
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1
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61
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May 23, 2023
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CITEsq loading in RNA and ADT data
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1
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54
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May 19, 2023
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Reading in data with scanpy.read_10x_mtx gives back KeyError:1 when features.tsv contains only one column (gene symbols) and ValueError when adding 2 columns (gene ids and feature types)(
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0
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29
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May 17, 2023
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Show cluster numbers on scanpy UMAP plot like in Featureplot in Seurat
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4
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464
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May 15, 2023
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Is it acceptable practice to correct cell labels based on UMAP coordinates?
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0
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36
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May 12, 2023
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I want to draw dendrogram on both x and y axes in scanpy's sc.pl .dotplot
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0
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45
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May 9, 2023
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Violin plot - subset vs. all cells
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0
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31
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May 8, 2023
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Failed to import scanpy on jupyter notebook
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0
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50
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May 8, 2023
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Batch effect correction using combat
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2
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82
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May 4, 2023
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Analyse sub-sections of a spatial visium slide
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0
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48
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April 28, 2023
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Question on handling sc.pp.regress_out() in scanpy
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0
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80
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April 24, 2023
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Error with sc.tl.rank_genes_groups : invalid value encountered in log2 self.stats
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0
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64
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April 22, 2023
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Regress out cell cycle
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0
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91
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April 20, 2023
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Heatmap group color repeated for >20 groups
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1
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89
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April 20, 2023
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Trouble Reading .h5 files
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1
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128
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April 13, 2023
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Layer (counts) loss after adata.raw.to_adata()
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0
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83
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April 13, 2023
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Question about diffusion map "gaussian" implementation
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0
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36
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April 12, 2023
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No unique function for adata.obs
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1
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71
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April 7, 2023
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Regressing out variables in pearson residual normalization
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1
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161
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April 7, 2023
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Random umap and clustering resullt
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5
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264
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April 7, 2023
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"ValueError: cannot specify integer `bins` when input data contains infinity" in multi sample data
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5
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324
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April 5, 2023
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Better input data for finding DEGs
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0
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55
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April 5, 2023
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Finding markers (DEGs) methods
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0
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51
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April 5, 2023
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UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored
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6
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1403
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April 4, 2023
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Problems subsetting
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0
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92
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March 27, 2023
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