|
About the scanpy category
|
|
0
|
608
|
March 4, 2022
|
|
Sc.pl.rank_genes_groups_heatmap - saving figure to file
|
|
0
|
15
|
January 27, 2026
|
|
Interpretting differential gene expression dotplot
|
|
0
|
17
|
January 23, 2026
|
|
When to use the batch_key in highly_variable_genes()
|
|
0
|
17
|
January 21, 2026
|
|
Remove ribosomal genes driving variation (on PC plot)?
|
|
0
|
22
|
December 17, 2025
|
|
Sc.pp.filter_genes how to use
|
|
0
|
35
|
December 16, 2025
|
|
What is the context or history of having both inplace and copy args everywhere?
|
|
1
|
20
|
December 15, 2025
|
|
Draw_graph results in a cloud or nice PAGA-like structure depending on dataset?
|
|
0
|
25
|
December 4, 2025
|
|
Sc.tl.ingest over representing rare cell types in spatial transcriptomics data
|
|
0
|
56
|
November 18, 2025
|
|
Impact of scaling on clustering results and controlling minimum cluster size in Leiden clustering
|
|
1
|
126
|
November 10, 2025
|
|
How should I process the data after removing low-quality cell clusters?
|
|
0
|
41
|
November 9, 2025
|
|
Rank_genes_groups expects log data but default to adata.raw, why?
|
|
0
|
70
|
November 7, 2025
|
|
Question about implementation of highly_variable_genes
|
|
0
|
47
|
November 3, 2025
|
|
Posterior probability interpretability (soft=True)
|
|
1
|
76
|
September 25, 2025
|
|
How could `adata.raw.X` contain non-integer values?
|
|
2
|
209
|
July 13, 2025
|
|
Scanpy write compression vs os compression
|
|
1
|
88
|
June 28, 2025
|
|
How can I change the color of the "groupby" labels from a dotplot?
|
|
0
|
70
|
June 4, 2025
|
|
Unexplained change in UMAP
|
|
3
|
269
|
May 27, 2025
|
|
Sc.pp.highly_variable_genes with batch_key causes segmentation fault
|
|
2
|
245
|
May 26, 2025
|
|
Best Practices for Multi-Panel Figures
|
|
0
|
96
|
April 11, 2025
|
|
Stacked violin API related question
|
|
2
|
416
|
April 1, 2025
|
|
Any MLX (MPS) framework accelerate solution for scanpy？
|
|
1
|
130
|
March 31, 2025
|
|
Split dotplot by condition
|
|
2
|
196
|
March 3, 2025
|
|
Rank_genes_groups pts and DE
|
|
0
|
329
|
February 27, 2025
|
|
Reg negative and positive TF activity values
|
|
0
|
45
|
February 24, 2025
|
|
Help with harmony and scanpy
|
|
3
|
995
|
February 14, 2025
|
|
Weird output combat integration two datasets
|
|
2
|
94
|
February 6, 2025
|
|
How to deal with negative logfoldchange in dotplot
|
|
0
|
80
|
February 6, 2025
|
|
Replicating data analysis using published pipeline
|
|
0
|
74
|
December 10, 2024
|
|
Psutil error when running sc.neighbors() in tutorial notebook
|
|
0
|
43
|
December 5, 2024
|