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Psutil error when running sc.neighbors() in tutorial notebook
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0
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63
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December 5, 2024
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Difference between differentialy expressed genes and violin plot
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0
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109
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December 3, 2024
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10X data import, "No such file or directory: features.tsv.gz"
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0
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155
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November 29, 2024
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Use a dictionnary with heatmaps
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0
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73
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November 25, 2024
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Difference between tl.rank_genes_groups and pl.rank_genes_groups_heatmap
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0
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336
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November 20, 2024
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Radial shape of cluster on UMAP, why?
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0
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236
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November 7, 2024
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Scanpy.pl.rank_genes_groups_dotplot doesn't plot gene symbols in adata.var_names
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0
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261
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September 30, 2024
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Sc.pp.regress_out() with large datasets
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0
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269
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September 19, 2024
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Trouble Making a Z-Score Heatmap
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2
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1427
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September 11, 2024
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Loosing anndata .var layer when using sc.concat?
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3
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1678
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September 9, 2024
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Changing color/size of textfont with sc.pl.umap
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2
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811
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September 4, 2024
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Understanding the behaviour of sc.pp.highly_variable_genes with a batch_key and different values of n_top_genes
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1
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774
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August 15, 2024
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Sc.pl.umap scales
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1
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207
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July 30, 2024
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P-values for scanpy.tl.rank_genes_groups
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1
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225
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July 30, 2024
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Stannotation with scanpy and seaborn
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0
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89
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July 30, 2024
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Do I need to scale my adata before running sc.tl.score_genes?
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1
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326
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July 23, 2024
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Some default parameter annotations in API are confusing
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2
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106
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July 23, 2024
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Scanpy.tl.rank_genes_groups with wilcoxon returns same score for multiple genes
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0
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402
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July 15, 2024
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UMAP plot colors problem
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2
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1257
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June 6, 2024
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How to find DE genes between different datasets?
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1
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496
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May 22, 2024
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Var_names_make_unique()
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1
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1564
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May 9, 2024
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Subsetting anndata is causing error problems
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3
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863
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May 5, 2024
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Subsetting/Re-normalization issue
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1
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331
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April 30, 2024
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Computing sc.pp.neighbors without method?
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2
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804
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April 25, 2024
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How can I logarithmize the data for wilcoxon test?
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1
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575
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April 25, 2024
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Does processing the data always overwrite the raw counts?
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3
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2505
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April 22, 2024
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Question about diffusion map "gaussian" implementation
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3
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379
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April 22, 2024
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How to interpret Diffusion Maps?
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0
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583
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April 18, 2024
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How can I export list of genes and counts for each cluster from adata.raw?
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1
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661
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April 12, 2024
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Change the font family for scanpy.pl in linux
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1
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397
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April 11, 2024
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