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Sc.pp.highly_variable_genes with batch_key causes segmentation fault
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0
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92
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December 24, 2023
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Differential gene expression - normalize gene values?
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0
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121
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December 6, 2023
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Error when saving adata with adata.write_h5ad(): "Above error raised while writing key 'names' of to /"
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2
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990
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December 3, 2023
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UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored
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8
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6006
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December 1, 2023
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Methods of calculating graphs
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0
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142
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November 9, 2023
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Scanpy equivalent of Seurat's FindConservedMarkers
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0
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171
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November 8, 2023
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Correlation matrix values
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0
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177
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November 8, 2023
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Reading matrix.mtx with "real" number format
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0
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177
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October 29, 2023
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Contour Plot based on gene expression or score
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0
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211
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October 26, 2023
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How to show the cells on my umap projection based on barcodes
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2
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306
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October 12, 2023
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Run scanpy.pp.neighbors and UMAP on a different layer other than X?
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2
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401
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October 11, 2023
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Specify prefix with regular expression in scanpy.read_10x_mtx()
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0
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184
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October 2, 2023
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How to ScanPy cluster already CPM normalized/log transformed data?
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6
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953
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October 1, 2023
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Expression_cutoff optiion from scanpy.pl.dotplot function
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0
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135
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September 28, 2023
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Gene shows up in dotplot, but it's not present in var_names
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1
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277
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September 16, 2023
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Normalization on rpkm data
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0
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146
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September 11, 2023
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Error when draw UMAP: object has no attribute 'get_cmap'
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4
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2266
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September 5, 2023
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Set dtype to np.float32 and memory conservation
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0
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176
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September 1, 2023
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Comparing number of differentially expressed genes (DEGs)
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0
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256
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August 31, 2023
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Why scanpy computes HVGs based on the data after log1p?
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0
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213
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August 28, 2023
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Customizing Dendrogram and Cluster Names Placement in sc.pl.matrixplot
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0
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212
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August 18, 2023
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How can I adjust the legend in the Scanpy dotplot?
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0
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355
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August 14, 2023
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Missing pre-processed dataset in h5ad format (scanorama tutorial)
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0
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193
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August 8, 2023
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Extracting genes unique to only one cluster/cell type
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0
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162
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August 7, 2023
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How to retain gene only present/mapped in one of the dataset before integration?
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0
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173
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August 1, 2023
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Apply sc.pp.highly_variable_genes to SCT-normalized residuals or counts
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0
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169
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July 27, 2023
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How to find HVG in Seurat-integrated data?
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1
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405
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July 27, 2023
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Error scanpy pbmc data
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4
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484
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July 25, 2023
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Best pre-processing steps for sc.tl.ingest()?
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0
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351
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July 20, 2023
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Loosing anndata .var layer when using sc.concat?
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0
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201
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July 14, 2023
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