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UMAP plot colors problem
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2
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615
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June 6, 2024
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How to find DE genes between different datasets?
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1
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279
|
May 22, 2024
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Var_names_make_unique()
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1
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1055
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May 9, 2024
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Subsetting anndata is causing error problems
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3
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716
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May 5, 2024
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Subsetting/Re-normalization issue
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1
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275
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April 30, 2024
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Computing sc.pp.neighbors without method?
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2
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545
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April 25, 2024
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How can I logarithmize the data for wilcoxon test?
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1
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333
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April 25, 2024
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Does processing the data always overwrite the raw counts?
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3
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2186
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April 22, 2024
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Question about diffusion map "gaussian" implementation
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3
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294
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April 22, 2024
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How to interpret Diffusion Maps?
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0
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363
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April 18, 2024
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How can I export list of genes and counts for each cluster from adata.raw?
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1
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512
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April 12, 2024
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Change the font family for scanpy.pl in linux
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1
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235
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April 11, 2024
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TCR and BCR genes and HVGs selection
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5
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215
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April 3, 2024
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Differential expression genes: test to use?
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0
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306
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April 2, 2024
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Leiden clustering gives me different results when I run it
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1
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407
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April 1, 2024
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Does Scanpy stores raw count as int or float?
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1
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354
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March 25, 2024
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Sc.pl.draw_graph
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1
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260
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March 19, 2024
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Normalized data found instead of raw counts
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2
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727
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March 18, 2024
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Sc.pl.draw_graph is strongly affected by the outliers
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0
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121
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March 18, 2024
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How to reuse cmap for other plots?
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3
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313
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March 9, 2024
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How to get dot values from `sc.pl.dotplot()`?
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1
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585
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March 1, 2024
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Remove genes from highly variable genes
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1
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685
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February 21, 2024
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Converting tab-delimited files to adata in a memory-efficient way
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3
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207
|
February 21, 2024
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ModuleNotFoundErrror: no module named "importlib.metadata"
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4
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2285
|
February 15, 2024
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Error with cyclone ['DataFrame' object has no attribute 'iteritems' ]
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0
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235
|
February 12, 2024
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Plots shifted when using scanpy in R markdown
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0
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133
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February 1, 2024
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Trying to read custom genome using sc.read_10x_h5
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0
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315
|
January 26, 2024
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Heatmap cannot be assigned as a subplot
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1
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381
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January 16, 2024
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Umap shapes different for the same dataset
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1
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291
|
January 15, 2024
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Mismatch between MAST DE results and dotplot
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0
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160
|
January 9, 2024
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