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Help with package setup
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2
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17
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October 7, 2025
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Domain adaptation to pre-train batch correction model using paired data
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12
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130
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May 27, 2025
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Macbook M1 M2 mps acceleration with scVI
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9
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1738
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May 30, 2025
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Daf (Data in Axes in Formats)
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0
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22
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September 24, 2024
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Access to each training example's original index in the input Anndata object
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0
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124
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March 12, 2024
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Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
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1
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249
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February 16, 2024
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Trying to read custom genome using sc.read_10x_h5
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0
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344
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January 26, 2024
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Questions about scib weight choice
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0
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191
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December 5, 2023
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UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored
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8
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7737
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December 1, 2023
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Expression_cutoff optiion from scanpy.pl.dotplot function
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0
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214
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September 28, 2023
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How to best integrate Genomic Variant Information
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1
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254
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August 16, 2023
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Debugging Issue for CITE-seq analysis with totalVI juytper notebook tutorial
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6
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339
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June 21, 2023
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COMPASS Installation tutorial - CPLEX Installation
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0
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281
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June 19, 2023
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AnnLoader for mudata?
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1
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524
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April 18, 2023
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Question about Github Issue
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2
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1081
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March 22, 2023
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Make another probabilistic model in scvi-tools
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2
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366
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March 22, 2023
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Mini-batching error after registering MuData .varm field with custom scvi-tools model
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1
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299
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March 1, 2023
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scVI access the model
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4
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483
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February 9, 2023
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How to create a layer over a subset of .obs or .vars?
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1
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613
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January 20, 2023
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Adding "equipment" to AnnData objects for neat addition of functionality
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3
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458
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November 1, 2022
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How to dynamically mask categorical_covariate_keys during training?
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3
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371
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October 19, 2022
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Progress not reporting loss from custom training plan
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3
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536
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October 5, 2022
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Difference between `TrainingPlan.log()` vs `TrainingPlan.compute_and_log_metrics()`?
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1
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317
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October 5, 2022
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Calls to decoder.forward() in VAE.generative() wrt the current DecoderSCVI API?
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0
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305
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September 15, 2022
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`tests/models/test_pyro.py::test_pyro_bayesian_save_load` fails
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2
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503
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August 26, 2022
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Help understanding inheritance for scvi.models
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1
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368
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August 22, 2022
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Consistent results when using scvi.model.SCVI
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3
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786
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May 11, 2022
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Device _make_data_loader for prediction
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2
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466
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December 29, 2021
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Attribution and license when using the scvi-tools-skeleton
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4
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500
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November 6, 2021
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Docker image for scvitools
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1
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904
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October 15, 2021
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