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About the anndata category
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0
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438
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March 4, 2022
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How to transfer annotation from cell subset to original object?
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0
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8
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February 18, 2025
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Lazy loading of Zarr from S3
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3
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19
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January 30, 2025
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Error reading HDF5 file in MuData/AnnData
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2
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47
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October 6, 2024
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Convert Scanpy (h5ad) to Seurat (rds)
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9
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13360
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September 27, 2024
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How can I process anndata using multiprocessing?
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2
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57
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September 27, 2024
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CNV scores in infercnvpy
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0
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34
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September 6, 2024
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Anndata.concat([a,b], join="inner") does not behave as a.concat(b)
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1
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129
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September 4, 2024
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Filtering out a subset of genes in adata
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3
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368
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July 31, 2024
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How can I load an anndata object when 'raw' was saved as a dictionary
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1
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74
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July 23, 2024
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How to subset anndata variables, but still store the removed variables elsewhere for downstream analysis?
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1
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72
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July 23, 2024
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Differences between .X, .raw.X, and .raw in anndata object
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6
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5818
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May 10, 2024
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Subset on adata.uns["X"].var - help please!
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1
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227
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May 8, 2024
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Subsetting anndata using genelist
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4
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3416
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May 5, 2024
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Help with concat
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2
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917
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May 1, 2024
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Managing anndata with multiple features from each gene
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4
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102
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April 17, 2024
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Is anndata limited to 2d data?
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3
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363
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April 5, 2024
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Issues setting up anndata for SCVI
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2
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358
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April 2, 2024
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Merging identical genes from 10x fixed scRNA
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3
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239
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March 6, 2024
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How to reorder adata according to sorted indices?
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4
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682
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February 27, 2024
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Cannot modify AnnData object
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2
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769
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February 16, 2024
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Bus error when writing concatenated adata
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1
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163
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January 26, 2024
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Var counts 0 after gene filtering
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1
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185
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January 25, 2024
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Converting view of a backed anndata object into non-view/non-backed
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2
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372
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January 16, 2024
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Counts in layers is zero after ad.concat
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2
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171
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January 15, 2024
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Sorting annData object by observations or variables?
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1
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1089
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January 10, 2024
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Remove samples/rows from anndata
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5
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5353
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January 9, 2024
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Error in Atlas-level-integration-of-lung-data Tutorial
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4
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373
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November 1, 2023
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Spliced counts scvelo
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1
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388
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August 23, 2023
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Is it possible to add 2 or more datasets to a single anndata object?
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0
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261
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July 6, 2023
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