|
About the anndata category
|
|
0
|
490
|
March 4, 2022
|
|
Scanpy: use of layers
|
|
3
|
35
|
July 17, 2026
|
|
Seeking guidance and reviewers for AnnData HTML representation PR (#2236)
|
|
2
|
43
|
December 1, 2025
|
|
.raw. car_names reassignation
|
|
2
|
48
|
November 20, 2025
|
|
Convert Scanpy (h5ad) to Seurat (rds)
|
|
10
|
18669
|
November 6, 2025
|
|
Changing the order of the anndata objects in anndata.concat changes the leiden clustering
|
|
6
|
196
|
October 9, 2025
|
|
Memory Usage in multiple New Formats
|
|
2
|
190
|
September 2, 2025
|
|
How can I operate on view of Anndata object when the Object itself is large to load to memory?
|
|
1
|
167
|
September 2, 2025
|
|
Lazy Loading Anndata backed in Zarr Arrays from Disk
|
|
5
|
420
|
May 28, 2025
|
|
Efficient pseudobulking
|
|
4
|
378
|
May 28, 2025
|
|
Convert anndata to seurat (spatial)
|
|
1
|
226
|
May 9, 2025
|
|
How to transfer annotation from cell subset to original object?
|
|
1
|
124
|
April 10, 2025
|
|
Lazy loading of Zarr from S3
|
|
3
|
249
|
January 30, 2025
|
|
Error reading HDF5 file in MuData/AnnData
|
|
2
|
135
|
October 6, 2024
|
|
How can I process anndata using multiprocessing?
|
|
2
|
217
|
September 27, 2024
|
|
CNV scores in infercnvpy
|
|
0
|
138
|
September 6, 2024
|
|
Anndata.concat([a,b], join="inner") does not behave as a.concat(b)
|
|
1
|
232
|
September 4, 2024
|
|
Filtering out a subset of genes in adata
|
|
3
|
1175
|
July 31, 2024
|
|
How can I load an anndata object when 'raw' was saved as a dictionary
|
|
1
|
221
|
July 23, 2024
|
|
How to subset anndata variables, but still store the removed variables elsewhere for downstream analysis?
|
|
1
|
238
|
July 23, 2024
|
|
Differences between .X, .raw.X, and .raw in anndata object
|
|
6
|
7625
|
May 10, 2024
|
|
Subset on adata.uns["X"].var - help please!
|
|
1
|
413
|
May 8, 2024
|
|
Subsetting anndata using genelist
|
|
4
|
4607
|
May 5, 2024
|
|
Help with concat
|
|
2
|
1136
|
May 1, 2024
|
|
Managing anndata with multiple features from each gene
|
|
4
|
159
|
April 17, 2024
|
|
Is anndata limited to 2d data?
|
|
3
|
448
|
April 5, 2024
|
|
Issues setting up anndata for SCVI
|
|
2
|
549
|
April 2, 2024
|
|
Merging identical genes from 10x fixed scRNA
|
|
3
|
417
|
March 6, 2024
|
|
How to reorder adata according to sorted indices?
|
|
4
|
1121
|
February 27, 2024
|
|
Cannot modify AnnData object
|
|
2
|
1086
|
February 16, 2024
|