|
Can scVI take as input SCT-normalized data?
|
|
2
|
53
|
September 8, 2026
|
|
Open-source pipeline for integrating spatial transcriptomics and proteomics in 3D microscopy
|
|
0
|
9
|
September 4, 2026
|
|
Allowed downstream analysis with get_normalized_expression?
|
|
6
|
162
|
July 30, 2026
|
|
SCVI view_anndata_setup causes AttributeError with rich.pretty
|
|
1
|
41
|
July 8, 2026
|
|
Getting normalized expression
|
|
13
|
272
|
May 13, 2026
|
|
Mapping 10X Xenium 5k data to scRNA-seq reference
|
|
3
|
164
|
April 23, 2026
|
|
MRVI Jax Error "Invalid component distribution"
|
|
3
|
74
|
April 13, 2026
|
|
Plotting the tangram imputed spatial data with spatialdata_plot
|
|
3
|
86
|
March 11, 2026
|
|
Pseudobulk after Performing integration with scatlasvae or scVI?
|
|
4
|
218
|
January 23, 2026
|
|
Predict cell type with scANVI for spatial transcriptomics data (Xenium)
|
|
7
|
633
|
December 28, 2025
|
|
Question about complex experiment
|
|
1
|
122
|
November 25, 2025
|
|
Excluding Ig and ribosomal genes from HVG selection in scVI, best practice?
|
|
1
|
228
|
October 22, 2025
|
|
How to use scib benchmark-metrics evaluate the adata after BBKNN integretion
|
|
3
|
225
|
October 7, 2025
|
|
Anchor-based integration methods
|
|
1
|
103
|
September 25, 2025
|
|
How to Correct for Intra-Organ Batch Effects Without Removing Inter-Organ Differences?
|
|
6
|
206
|
August 5, 2025
|
|
Can we use resolVI and squidpy to annotate a CosMX object based on a single cell reference?
|
|
1
|
184
|
August 3, 2025
|
|
How to handle batch effects within the query dataset when using scArches + SCVI?
|
|
1
|
194
|
July 31, 2025
|
|
Shared cell types not mixing when integrating datasets from different species
|
|
4
|
310
|
June 19, 2025
|
|
SMART-seq and MARS-seq pipelines
|
|
1
|
156
|
June 19, 2025
|
|
Domain adaptation to pre-train batch correction model using paired data
|
|
12
|
379
|
May 27, 2025
|
|
scVI batch correction clusters all cells from sample in a circle (potential artifact)
|
|
14
|
439
|
June 3, 2025
|
|
How should I calculate the knn entropy using the leiden clusters?
|
|
1
|
88
|
April 10, 2025
|
|
Understanding scVI integration inside R with Seurat v5 & SCTransform
|
|
1
|
613
|
April 6, 2025
|
|
How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)?
|
|
8
|
174
|
April 10, 2025
|
|
inferCNVpy after running scVI with batch as key
|
|
5
|
1113
|
March 24, 2025
|
|
Error when running scvi.data.add_dna_sequence
|
|
1
|
96
|
March 18, 2025
|
|
SysVI model and normalized expression
|
|
1
|
233
|
March 15, 2025
|
|
Scvi-tools and xenium
|
|
7
|
975
|
March 13, 2025
|
|
Parameters in training model for integrating datasets with scVI in R
|
|
13
|
321
|
March 9, 2025
|
|
TotalVI not fully integrating CITEseq cells with GEX and missing protein values
|
|
1
|
130
|
February 6, 2025
|