|
Pseudobulk after Performing integration with scatlasvae or scVI?
|
|
1
|
28
|
November 6, 2025
|
|
Excluding Ig and ribosomal genes from HVG selection in scVI, best practice?
|
|
1
|
45
|
October 22, 2025
|
|
How to use scib benchmark-metrics evaluate the adata after BBKNN integretion
|
|
3
|
30
|
October 7, 2025
|
|
Anchor-based integration methods
|
|
1
|
36
|
September 25, 2025
|
|
How to Correct for Intra-Organ Batch Effects Without Removing Inter-Organ Differences?
|
|
6
|
67
|
August 5, 2025
|
|
Can we use resolVI and squidpy to annotate a CosMX object based on a single cell reference?
|
|
1
|
60
|
August 3, 2025
|
|
How to handle batch effects within the query dataset when using scArches + SCVI?
|
|
1
|
60
|
July 31, 2025
|
|
Shared cell types not mixing when integrating datasets from different species
|
|
4
|
130
|
June 19, 2025
|
|
SMART-seq and MARS-seq pipelines
|
|
1
|
55
|
June 19, 2025
|
|
Domain adaptation to pre-train batch correction model using paired data
|
|
12
|
155
|
May 27, 2025
|
|
scVI batch correction clusters all cells from sample in a circle (potential artifact)
|
|
14
|
142
|
June 3, 2025
|
|
How should I calculate the knn entropy using the leiden clusters?
|
|
1
|
32
|
April 10, 2025
|
|
Understanding scVI integration inside R with Seurat v5 & SCTransform
|
|
1
|
284
|
April 6, 2025
|
|
How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)?
|
|
8
|
66
|
April 10, 2025
|
|
inferCNVpy after running scVI with batch as key
|
|
5
|
880
|
March 24, 2025
|
|
Error when running scvi.data.add_dna_sequence
|
|
1
|
60
|
March 18, 2025
|
|
SysVI model and normalized expression
|
|
1
|
108
|
March 15, 2025
|
|
Scvi-tools and xenium
|
|
7
|
586
|
March 13, 2025
|
|
Parameters in training model for integrating datasets with scVI in R
|
|
13
|
132
|
March 9, 2025
|
|
TotalVI not fully integrating CITEseq cells with GEX and missing protein values
|
|
1
|
62
|
February 6, 2025
|
|
What training datasets are used in the scVI pretrained model (version 2024-07-01)?
|
|
2
|
78
|
December 23, 2024
|
|
What kind of data type does infercnvpy need as input?
|
|
0
|
37
|
November 27, 2024
|
|
scVI: effect of unbalanced number of cells in batches
|
|
1
|
83
|
November 27, 2024
|
|
Scvi-tools: different DEGs when comparing same data
|
|
2
|
125
|
November 19, 2024
|
|
How to best integrate scRNA-seq with transcription factor expression measured by fluorescent signals
|
|
0
|
28
|
November 18, 2024
|
|
Integrating different tissues with scVI
|
|
3
|
185
|
November 15, 2024
|
|
scVI 21618 problem
|
|
5
|
278
|
November 7, 2024
|
|
[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC?
|
|
1
|
83
|
October 17, 2024
|
|
Model Training got only 2 epochs
|
|
4
|
241
|
October 14, 2024
|
|
Trouble integrating my dataset into a reference dataset
|
|
16
|
444
|
October 11, 2024
|