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What kind of data type does infercnvpy need as input?
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0
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3
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November 27, 2024
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scVI: effect of unbalanced number of cells in batches
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1
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20
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November 27, 2024
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Scvi-tools: different DEGs when comparing same data
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2
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16
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November 19, 2024
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How to best integrate scRNA-seq with transcription factor expression measured by fluorescent signals
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0
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13
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November 18, 2024
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Integrating different tissues with scVI
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3
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68
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November 15, 2024
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scVI 21618 problem
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5
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204
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November 7, 2024
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[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC?
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1
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29
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October 17, 2024
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Model Training got only 2 epochs
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4
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45
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October 14, 2024
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Trouble integrating my dataset into a reference dataset
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16
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129
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October 11, 2024
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Is it possible to add extra covariate categories to a trained SCVI model?
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3
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48
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October 4, 2024
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Scvi-tools and xenium
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6
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132
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September 25, 2024
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Embedding number for visualization
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10
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43
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September 23, 2024
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scArches with multiple covariates
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9
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647
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September 22, 2024
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Anndata.concat([a,b], join="inner") does not behave as a.concat(b)
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1
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114
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September 4, 2024
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Trajectory analysis of combined single-cell and single-nuclei data
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1
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268
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September 2, 2024
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Can I use the package scib-metrics on methods that don't output an embedding?
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6
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252
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August 31, 2024
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How to compare different parameter sets using the validation loss?
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6
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431
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August 26, 2024
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Error when using scVI.model.train
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2
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79
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August 19, 2024
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scVI integration set batch_key and poor Umap result
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3
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90
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August 7, 2024
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Is the output of `get_normalized_expression` batch-corrected or not?
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2
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108
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August 5, 2024
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Benchmarking with scib-metrics: Graph Connectivity as a batch correction metric
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5
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49
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July 25, 2024
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WNN neighborhood graph construction failing
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1
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195
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July 23, 2024
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Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix'
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4
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270
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July 21, 2024
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Error with DefaultAssay in R when Integrating Data Using scvi-tools
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4
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103
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July 16, 2024
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Recommendation for transform_batch / categorical_covariate_keys to obtain "batch corrected" counts
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1
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110
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July 3, 2024
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The output of scANVI
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2
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121
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June 19, 2024
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Reproducing scib-metrics usage after API change
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2
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74
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June 3, 2024
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Issues running the updated version of MrVI
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1
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157
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June 3, 2024
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How to find DE genes between different datasets?
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1
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188
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May 22, 2024
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Insufficient batch correction for certain cell-types
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8
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320
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May 15, 2024
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