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Trouble integrating my dataset into a reference dataset
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5
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17
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September 13, 2024
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Embedding number for visualization
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7
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18
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September 9, 2024
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Anndata.concat([a,b], join="inner") does not behave as a.concat(b)
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1
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96
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September 4, 2024
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scArches with multiple covariates
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7
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571
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September 4, 2024
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Scvi-tools and xenium
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5
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53
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September 3, 2024
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Trajectory analysis of combined single-cell and single-nuclei data
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1
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239
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September 2, 2024
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Can I use the package scib-metrics on methods that don't output an embedding?
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6
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217
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August 31, 2024
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How to compare different parameter sets using the validation loss?
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6
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353
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August 26, 2024
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Error when using scVI.model.train
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2
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33
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August 19, 2024
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scVI integration set batch_key and poor Umap result
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3
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41
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August 7, 2024
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Is the output of `get_normalized_expression` batch-corrected or not?
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2
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43
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August 5, 2024
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Benchmarking with scib-metrics: Graph Connectivity as a batch correction metric
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5
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39
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July 25, 2024
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WNN neighborhood graph construction failing
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1
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191
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July 23, 2024
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Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix'
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4
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92
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July 21, 2024
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Error with DefaultAssay in R when Integrating Data Using scvi-tools
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4
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75
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July 16, 2024
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Recommendation for transform_batch / categorical_covariate_keys to obtain "batch corrected" counts
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1
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75
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July 3, 2024
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The output of scANVI
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2
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113
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June 19, 2024
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scVI 21618 problem
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2
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161
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June 5, 2024
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Reproducing scib-metrics usage after API change
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2
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73
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June 3, 2024
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Issues running the updated version of MrVI
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1
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144
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June 3, 2024
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How to find DE genes between different datasets?
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1
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140
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May 22, 2024
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Insufficient batch correction for certain cell-types
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8
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289
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May 15, 2024
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Scvi.data.organize_multiome_anndatas with two big anndata objects
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1
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110
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May 3, 2024
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Benchmarking CellHint with scib-metrics Benchmarker tool how to use embedding_obsm_keys
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1
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124
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April 25, 2024
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Scvi model training after sub-clustering
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1
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160
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April 25, 2024
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scvi.model.SCVI input values
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1
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141
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April 23, 2024
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Issues setting up anndata for SCVI
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2
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252
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April 2, 2024
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Remove outliers from trained scVI model
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3
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151
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March 23, 2024
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Access to each training example's original index in the input Anndata object
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0
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122
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March 12, 2024
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Integration of Multiple Multiome Datasets
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5
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498
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March 6, 2024
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