Scanorama embeddings on CellRank analysis
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0
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22
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May 11, 2023
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Not sure if scvi is using my GPU or not
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6
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88
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May 9, 2023
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scArches with multiple covariates
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3
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80
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May 5, 2023
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Validation loss lower than the training loss in scvi
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6
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140
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May 4, 2023
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Dataset integration and analysis
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3
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104
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May 3, 2023
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Choosing a Batch Key
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2
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110
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April 18, 2023
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Muon function mofa.plot_factors
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2
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69
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April 18, 2023
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scRNA data integration
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0
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67
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April 6, 2023
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"ValueError: cannot specify integer `bins` when input data contains infinity" in multi sample data
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5
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324
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April 5, 2023
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Muon: multiple set of data comparative analysis
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2
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205
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February 21, 2023
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scVI access the model
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4
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133
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February 9, 2023
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3 sets of CITE-Seq data, how to concatenate or make single file for further analysis?
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0
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89
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February 7, 2023
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Working with CellRanger Aggregated Data
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1
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78
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February 4, 2023
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Multiple training sets with scVI?
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1
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126
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January 20, 2023
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inferCNVpy after running scVI with batch as key
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3
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173
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January 11, 2023
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Is it possible to do second round integration via X_normalized_scVI normalized counts?
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0
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112
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January 5, 2023
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Anndata.concatenate() with two 10x multiome datasets?
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2
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179
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December 29, 2022
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DE between conditions in a cluster
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4
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168
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December 14, 2022
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How to concatenate anndata properly?
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2
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1263
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November 3, 2022
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Integration of timelapse scRNA data
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3
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145
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October 25, 2022
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Best practices for processing/analyzing large scale scrna-seq datasets across multiple days
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2
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252
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September 15, 2022
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How to find HVG in Seurat-integrated data?
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0
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154
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August 24, 2022
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Advice regarding complex multimodal integration/analysis strategy
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0
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138
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July 28, 2022
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ScArches-TotalVI reproducibility
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15
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305
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May 19, 2022
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Batch Integration Parameter Tuning
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1
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285
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March 2, 2022
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totalVI tutorial of integration of CITE-seq datasets in R
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2
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178
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February 15, 2022
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Seed labeling vs Integration and label transfer: highly variable genes
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2
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227
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January 20, 2022
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Gene filtering prior to batch correction
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2
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338
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July 9, 2021
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Running TOTALVI data in which subset of cells do not have citeseq data
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8
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318
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March 25, 2021
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