Issues running the updated version of MrVI
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0
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12
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March 18, 2024
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Remove outliers from trained scVI model
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0
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22
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March 16, 2024
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Access to each training example's original index in the input Anndata object
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0
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23
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March 12, 2024
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Integration of Multiple Multiome Datasets
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5
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319
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March 6, 2024
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Explicit Access to the Training Set During scVI Training
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0
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29
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March 4, 2024
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Unexpected Effect of Augmentations on scVI Batch Integration
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0
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188
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March 2, 2024
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Can I use the package scib-metrics on methods that don't output an embedding?
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2
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63
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February 27, 2024
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Preserving biological variability in scVI sample integration
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4
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120
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February 16, 2024
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Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
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1
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82
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February 16, 2024
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Failure to remove a batch_key/ effect of number of LVs
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6
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149
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February 9, 2024
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Scvi and subtyping
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1
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110
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February 9, 2024
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How to compare different parameter sets using the validation loss?
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3
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118
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January 31, 2024
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Preparing data for training of a classifier while preserving biological signal
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0
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70
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January 27, 2024
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[Network inferences] Predicting cell-cell and cell-protein interactions using multiomics data?
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0
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63
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January 20, 2024
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Attribute Error while training simplescvi on tutorial lung data. Differences to full scvi?
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2
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85
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January 9, 2024
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Trajectory analysis of combined single-cell and single-nuclei data
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0
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103
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December 13, 2023
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scVI integration with all genes
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0
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141
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December 5, 2023
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Suggestion on parameters for training scvi model
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3
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280
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December 4, 2023
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Questions about scib weight choice
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0
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77
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December 5, 2023
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WNN neighborhood graph construction failing
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0
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93
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December 1, 2023
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Compatibility between scVI and SCENIC
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10
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344
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November 28, 2023
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Error in Fine-tuning scANVI Hyperparameters from Pretrained scVI Model
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2
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159
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November 20, 2023
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Increase scVI integration speed
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5
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346
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October 24, 2023
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Re-integration after subseting cluster
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2
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239
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September 26, 2023
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Sequential scArches
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0
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161
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September 24, 2023
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How to best integrate Genomic Variant Information
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1
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168
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August 16, 2023
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Missing pre-processed dataset in h5ad format (scanorama tutorial)
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0
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168
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August 8, 2023
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Sparse matrix error using totalVI integration
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1
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229
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August 4, 2023
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How to setseed in R?
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0
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150
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July 31, 2023
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Could not find function "scvi.model.SCVI.setup_anndata"
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0
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271
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July 29, 2023
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