Topics tagged integration

Topic	Replies	Views	Activity
Scanorama embeddings on CellRank analysis cellrank integration	0	22	May 11, 2023
Not sure if scvi is using my GPU or not scRNA-seq integration , scvi	6	88	May 9, 2023
scArches with multiple covariates scvi-tools integration , scarches , scvi	3	80	May 5, 2023
Validation loss lower than the training loss in scvi scvi-tools integration , scvi	6	140	May 4, 2023
Dataset integration and analysis scvi-tools totalvi , integration , cellassign , scvi , multivi	3	104	May 3, 2023
Choosing a Batch Key scvi-tools integration , scvi	2	110	April 18, 2023
Muon function mofa.plot_factors muon integration	2	69	April 18, 2023
scRNA data integration General integration	0	67	April 6, 2023
"ValueError: cannot specify integer `bins` when input data contains infinity" in multi sample data scanpy multivi , integration	5	324	April 5, 2023
Muon: multiple set of data comparative analysis muon integration	2	205	February 21, 2023
scVI access the model scvi-tools integration , developer , scvi	4	133	February 9, 2023
3 sets of CITE-Seq data, how to concatenate or make single file for further analysis? muon totalvi , integration , scanvi , diff-exp , multivi	0	89	February 7, 2023
Working with CellRanger Aggregated Data Help integration	1	78	February 4, 2023
Multiple training sets with scVI? scvi-tools scvi , integration	1	126	January 20, 2023
inferCNVpy after running scVI with batch as key Help scvi , integration	3	173	January 11, 2023
Is it possible to do second round integration via X_normalized_scVI normalized counts? scvi-tools integration , scvi	0	112	January 5, 2023
Anndata.concatenate() with two 10x multiome datasets? anndata multivi , integration	2	179	December 29, 2022
DE between conditions in a cluster scvi-tools diff-exp , scvi , integration	4	168	December 14, 2022
How to concatenate anndata properly? anndata scrna-seq , scvi , integration	2	1263	November 3, 2022
Integration of timelapse scRNA data scvi-tools integration , scvi	3	145	October 25, 2022
Best practices for processing/analyzing large scale scrna-seq datasets across multiple days scRNA-seq integration , scvi	2	252	September 15, 2022
How to find HVG in Seurat-integrated data? scanpy integration	0	154	August 24, 2022
Advice regarding complex multimodal integration/analysis strategy General integration , scanvi , multivi , totalvi , scvi	0	138	July 28, 2022
ScArches-TotalVI reproducibility scArches totalvi , integration	15	305	May 19, 2022
Batch Integration Parameter Tuning scvi-tools modeling , scvi , gene-selection , integration	1	285	March 2, 2022
totalVI tutorial of integration of CITE-seq datasets in R scvi-tools integration , totalvi	2	178	February 15, 2022
Seed labeling vs Integration and label transfer: highly variable genes scvi-tools integration , gene-selection , scanvi	2	227	January 20, 2022
Gene filtering prior to batch correction scRNA-seq integration , scrna-seq	2	338	July 9, 2021
Running TOTALVI data in which subset of cells do not have citeseq data scvi-tools totalvi , integration	8	318	March 25, 2021