|
Scvi-tools: different DEGs when comparing same data
|
|
2
|
9
|
November 19, 2024
|
|
scVI: effect of unbalanced number of cells in batches
|
|
0
|
8
|
November 19, 2024
|
|
How to best integrate scRNA-seq with transcription factor expression measured by fluorescent signals
|
|
0
|
10
|
November 18, 2024
|
|
Integrating different tissues with scVI
|
|
3
|
53
|
November 15, 2024
|
|
scVI 21618 problem
|
|
5
|
194
|
November 7, 2024
|
|
[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC?
|
|
1
|
25
|
October 17, 2024
|
|
Model Training got only 2 epochs
|
|
4
|
38
|
October 14, 2024
|
|
Trouble integrating my dataset into a reference dataset
|
|
16
|
116
|
October 11, 2024
|
|
Is it possible to add extra covariate categories to a trained SCVI model?
|
|
3
|
47
|
October 4, 2024
|
|
Scvi-tools and xenium
|
|
6
|
108
|
September 25, 2024
|
|
Embedding number for visualization
|
|
10
|
41
|
September 23, 2024
|
|
scArches with multiple covariates
|
|
9
|
628
|
September 22, 2024
|
|
Anndata.concat([a,b], join="inner") does not behave as a.concat(b)
|
|
1
|
110
|
September 4, 2024
|
|
Trajectory analysis of combined single-cell and single-nuclei data
|
|
1
|
263
|
September 2, 2024
|
|
Can I use the package scib-metrics on methods that don't output an embedding?
|
|
6
|
239
|
August 31, 2024
|
|
How to compare different parameter sets using the validation loss?
|
|
6
|
416
|
August 26, 2024
|
|
Error when using scVI.model.train
|
|
2
|
66
|
August 19, 2024
|
|
scVI integration set batch_key and poor Umap result
|
|
3
|
83
|
August 7, 2024
|
|
Is the output of `get_normalized_expression` batch-corrected or not?
|
|
2
|
93
|
August 5, 2024
|
|
Benchmarking with scib-metrics: Graph Connectivity as a batch correction metric
|
|
5
|
45
|
July 25, 2024
|
|
WNN neighborhood graph construction failing
|
|
1
|
194
|
July 23, 2024
|
|
Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix'
|
|
4
|
235
|
July 21, 2024
|
|
Error with DefaultAssay in R when Integrating Data Using scvi-tools
|
|
4
|
100
|
July 16, 2024
|
|
Recommendation for transform_batch / categorical_covariate_keys to obtain "batch corrected" counts
|
|
1
|
102
|
July 3, 2024
|
|
The output of scANVI
|
|
2
|
120
|
June 19, 2024
|
|
Reproducing scib-metrics usage after API change
|
|
2
|
74
|
June 3, 2024
|
|
Issues running the updated version of MrVI
|
|
1
|
154
|
June 3, 2024
|
|
How to find DE genes between different datasets?
|
|
1
|
170
|
May 22, 2024
|
|
Insufficient batch correction for certain cell-types
|
|
8
|
315
|
May 15, 2024
|
|
Scvi.data.organize_multiome_anndatas with two big anndata objects
|
|
1
|
120
|
May 3, 2024
|