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inferCNVpy after running scVI with batch as key
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5
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682
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March 24, 2025
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Error when running scvi.data.add_dna_sequence
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1
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26
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March 18, 2025
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SysVI model and normalized expression
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1
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33
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March 15, 2025
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Scvi-tools and xenium
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7
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263
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March 13, 2025
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How should I calculate the knn entropy using the leiden clusters?
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0
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9
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March 11, 2025
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Parameters in training model for integrating datasets with scVI in R
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13
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60
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March 9, 2025
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TotalVI not fully integrating CITEseq cells with GEX and missing protein values
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1
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22
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February 6, 2025
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What training datasets are used in the scVI pretrained model (version 2024-07-01)?
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2
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49
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December 23, 2024
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What kind of data type does infercnvpy need as input?
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0
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13
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November 27, 2024
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scVI: effect of unbalanced number of cells in batches
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1
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43
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November 27, 2024
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Scvi-tools: different DEGs when comparing same data
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2
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51
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November 19, 2024
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How to best integrate scRNA-seq with transcription factor expression measured by fluorescent signals
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0
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20
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November 18, 2024
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Integrating different tissues with scVI
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3
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119
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November 15, 2024
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scVI 21618 problem
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5
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227
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November 7, 2024
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[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC?
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1
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47
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October 17, 2024
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Model Training got only 2 epochs
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4
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113
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October 14, 2024
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Trouble integrating my dataset into a reference dataset
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16
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215
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October 11, 2024
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Is it possible to add extra covariate categories to a trained SCVI model?
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3
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63
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October 4, 2024
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Embedding number for visualization
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10
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60
|
September 23, 2024
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scArches with multiple covariates
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9
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716
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September 22, 2024
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Anndata.concat([a,b], join="inner") does not behave as a.concat(b)
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1
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132
|
September 4, 2024
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Trajectory analysis of combined single-cell and single-nuclei data
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1
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318
|
September 2, 2024
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Can I use the package scib-metrics on methods that don't output an embedding?
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6
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308
|
August 31, 2024
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How to compare different parameter sets using the validation loss?
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6
|
603
|
August 26, 2024
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Error when using scVI.model.train
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2
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114
|
August 19, 2024
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scVI integration set batch_key and poor Umap result
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3
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148
|
August 7, 2024
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Is the output of `get_normalized_expression` batch-corrected or not?
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2
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163
|
August 5, 2024
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Benchmarking with scib-metrics: Graph Connectivity as a batch correction metric
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5
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81
|
July 25, 2024
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WNN neighborhood graph construction failing
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1
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202
|
July 23, 2024
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Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix'
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4
|
365
|
July 21, 2024
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