Topics tagged integration

Topic	Replies	Views	Activity
scVI integration with all genes scvi-tools integration , scvi	0	7	December 5, 2023
Suggestion on parameters for training scvi model scvi-tools integration , scvi	3	22	December 4, 2023
Questions about scib weight choice scRNA-seq integration , totalvi , developer	0	10	December 5, 2023
WNN neighborhood graph construction failing muon scatac-seq , integration , peakvi	0	20	December 1, 2023
Compatibility between scVI and SCENIC scvi-tools integration , scvi	10	238	November 28, 2023
Error in Fine-tuning scANVI Hyperparameters from Pretrained scVI Model scvi-tools integration , scanvi	2	55	November 20, 2023
Integration of Multiple Multiome Datasets Multiome integration , multivi , totalvi	4	199	November 14, 2023
Increase scVI integration speed scvi-tools integration	5	188	October 24, 2023
Re-integration after subseting cluster scvi-tools integration , scvi	2	166	September 26, 2023
Sequential scArches scvi-tools integration , scvi , scarches	0	109	September 24, 2023
How to best integrate Genomic Variant Information muon integration , developer	1	125	August 16, 2023
Missing pre-processed dataset in h5ad format (scanorama tutorial) scanpy integration	0	118	August 8, 2023
Sparse matrix error using totalVI integration scvi-tools integration	1	139	August 4, 2023
How to setseed in R? scvi-tools integration , scvi	0	94	July 31, 2023
Could not find function "scvi.model.SCVI.setup_anndata" scvi-tools scrna-seq , integration , scvi	0	199	July 29, 2023
How to find HVG in Seurat-integrated data? scanpy integration	1	300	July 27, 2023
Bar plot using muon between scRNA-seq and scTCR-seq&scBCR-seq? scirpy integration	4	162	July 6, 2023
"ValueError: cannot specify integer `bins` when input data contains infinity" in multi sample data scanpy integration , multivi	6	1558	June 27, 2023
Can I aggregate images and data by shapes? spatialdata integration	3	127	June 22, 2023
COMPASS Installation tutorial - CPLEX Installation General integration , developer	0	151	June 19, 2023
Not sure if scvi is using my GPU or not scRNA-seq integration , scvi	7	435	June 13, 2023
Validation loss lower than the training loss in scvi scvi-tools integration , scvi	7	493	June 7, 2023
Scanorama embeddings on CellRank analysis cellrank integration	0	166	May 11, 2023
scArches with multiple covariates scvi-tools integration , scvi , scarches	3	279	May 5, 2023
Dataset integration and analysis scvi-tools integration , cellassign , scvi , multivi , totalvi	3	373	May 3, 2023
Choosing a Batch Key scvi-tools integration , scvi	2	391	April 18, 2023
Muon function mofa.plot_factors muon integration	2	194	April 18, 2023
scRNA data integration General integration	0	200	April 6, 2023
Muon: multiple set of data comparative analysis muon integration	2	370	February 21, 2023
scVI access the model scvi-tools integration , scvi , developer	4	262	February 9, 2023