Topics tagged multivi

Topic	Replies	Views	Activity
[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC? Multiome integration , multivi , totalvi	1	51	October 17, 2024
Scvi.data.organize_multiome_anndatas with two big anndata objects scvi-tools integration , scvi , multivi	1	139	May 3, 2024
Integration of Multiple Multiome Datasets Multiome integration , multivi , totalvi	5	638	March 6, 2024
How to compute the integration metrics scvi-tools multivi	1	168	February 16, 2024
MultiVI size factor for multiple modalities scvi-tools multivi	0	204	November 24, 2023
Nonsense UMAP when including categorical covariates in a MULTIVI model Help scvi , multivi	1	273	August 28, 2023
"ValueError: cannot specify integer `bins` when input data contains infinity" in multi sample data scanpy integration , multivi	6	4121	June 27, 2023
Dataset integration and analysis scvi-tools integration , cellassign , scvi , multivi , totalvi	3	839	May 3, 2023
totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data scvi-tools multivi , totalvi , modeling	3	751	March 9, 2023
3 sets of CITE-Seq data, how to concatenate or make single file for further analysis? muon integration , scanvi , diff-exp , multivi , totalvi	0	452	February 7, 2023
Anndata.concatenate() with two 10x multiome datasets? anndata integration , multivi	2	628	December 29, 2022
How to dynamically mask categorical_covariate_keys during training? scvi-tools scvi , multivi , developer	3	345	October 19, 2022
Clarification on unpaired data smoothing during MultiVI `training_step()`? scvi-tools multivi	0	269	October 7, 2022
multiVI and totalVI modal integration question scvi-tools scvi , multivi , totalvi	0	448	September 15, 2022
Advice regarding complex multimodal integration/analysis strategy General integration , scanvi , scvi , multivi , totalvi	0	383	July 28, 2022
How to impute the modality (like ATAC) when I only have the other modality (RNA) using a pre-trained MultiVI? scvi-tools multivi	5	341	July 1, 2022
Labels_key not available for scvi.model.MULTIVI.setup_anndata() scvi-tools multivi	3	431	March 1, 2022
Protocol for model optimization (currently focused on MultiVI) scvi-tools multivi	2	507	February 28, 2022
Reference mapping with MultiVI scvi-tools multivi	0	382	January 25, 2022
Integrate multiple samples for paired multi-omics data scvi-tools multivi	1	537	February 15, 2022
MULTIVI training fails before first epoch scvi-tools multivi	1	498	December 16, 2021
MultiVi with multiple GPUs and CPUs scvi-tools multivi , gpu	2	1034	December 2, 2021