Topics tagged multivi

Topic	Replies	Views	Activity
MultiVI questions on Integrating Multiple Multiome Datasets Multiome multivi	1	44	September 25, 2025
multiVI speed and cpu consumption Help multivi	2	38	August 30, 2025
Does MultiVI support using tile matrix directly instead of peak calling for ATAC input? scvi-tools multivi , scvi	2	46	July 9, 2025
Protocol for model optimization (currently focused on MultiVI) scvi-tools multivi	3	564	May 14, 2025
[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC? Multiome integration , multivi , totalvi	1	78	October 17, 2024
Scvi.data.organize_multiome_anndatas with two big anndata objects scvi-tools integration , scvi , multivi	1	163	May 3, 2024
Integration of Multiple Multiome Datasets Multiome totalvi , multivi , integration	5	739	March 6, 2024
How to compute the integration metrics scvi-tools multivi	1	183	February 16, 2024
MultiVI size factor for multiple modalities scvi-tools multivi	0	210	November 24, 2023
Nonsense UMAP when including categorical covariates in a MULTIVI model Help scvi , multivi	1	297	August 28, 2023
"ValueError: cannot specify integer `bins` when input data contains infinity" in multi sample data scanpy multivi , integration	6	4690	June 27, 2023
Dataset integration and analysis scvi-tools totalvi , scvi , integration , multivi , cellassign	3	907	May 3, 2023
totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data scvi-tools multivi , totalvi , modeling	3	817	March 9, 2023
3 sets of CITE-Seq data, how to concatenate or make single file for further analysis? muon integration , scanvi , totalvi , multivi , diff-exp	0	475	February 7, 2023
Anndata.concatenate() with two 10x multiome datasets? anndata multivi , integration	2	663	December 29, 2022
How to dynamically mask categorical_covariate_keys during training? scvi-tools developer , multivi , scvi	3	372	October 19, 2022
Clarification on unpaired data smoothing during MultiVI `training_step()`? scvi-tools multivi	0	278	October 7, 2022
multiVI and totalVI modal integration question scvi-tools scvi , multivi , totalvi	0	485	September 15, 2022
Advice regarding complex multimodal integration/analysis strategy General scvi , multivi , scanvi , integration , totalvi	0	395	July 28, 2022
How to impute the modality (like ATAC) when I only have the other modality (RNA) using a pre-trained MultiVI? scvi-tools multivi	5	358	July 1, 2022
Labels_key not available for scvi.model.MULTIVI.setup_anndata() scvi-tools multivi	3	446	March 1, 2022
Reference mapping with MultiVI scvi-tools multivi	0	388	January 25, 2022
Integrate multiple samples for paired multi-omics data scvi-tools multivi	1	574	February 15, 2022
MULTIVI training fails before first epoch scvi-tools multivi	1	518	December 16, 2021
MultiVi with multiple GPUs and CPUs scvi-tools multivi , gpu	2	1086	December 2, 2021