I am new to scvi-tools and I went through all of the tutorials. I learned peakVI consumes scATAC-seq data for DNA analysis; totalVI consumes CITE-seq data for RNA and protein analysis.
Here is my question, multiVI consumes both scRNA-seq and scATAC-seq data. Does it mean multiVI is capable to analyze DNA, RNA, and protein at the same time?
Another question is: can scRNA-seq and scATAC-seq data be used interchangeably in the totalVI model? I know some people treat scRNA-seq and scATAC-seq data interchangeably in their models. Is that the case for totalVI?
Hope someone can clarify my questions. Thanks.