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Excluding Ig and ribosomal genes from HVG selection in scVI, best practice?
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1
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20
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October 22, 2025
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How to handle batch effects within the query dataset when using scArches + SCVI?
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1
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54
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July 31, 2025
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Implementing Warmup to a component based on epoch
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2
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34
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July 31, 2025
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Deconvolute spatial transcriptomics (visium) with unannotated single-cell (10x)
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3
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66
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July 10, 2025
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Does MultiVI support using tile matrix directly instead of peak calling for ATAC input?
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2
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49
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July 9, 2025
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DestVI.from_rna_model RuntimeError: Error(s) in loading state_dict for FCLayers
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1
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34
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July 9, 2025
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Shared cell types not mixing when integrating datasets from different species
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4
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115
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June 19, 2025
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Domain adaptation to pre-train batch correction model using paired data
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12
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143
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May 27, 2025
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scVI batch correction clusters all cells from sample in a circle (potential artifact)
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14
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128
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June 3, 2025
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Scvi package can't be installed into google colab?
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6
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58
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April 20, 2025
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Is the scVI model applicable to bulk RNA-seq data from cell lines?
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1
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88
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April 16, 2025
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How should I calculate the knn entropy using the leiden clusters?
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1
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28
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April 10, 2025
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inferCNVpy after running scVI with batch as key
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5
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869
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March 24, 2025
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Error when running scvi.data.add_dna_sequence
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1
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54
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March 18, 2025
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SysVI model and normalized expression
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1
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99
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March 15, 2025
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Scvi-tools and xenium
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7
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560
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March 13, 2025
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Parameters in training model for integrating datasets with scVI in R
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13
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124
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March 9, 2025
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Issue with scVI model device
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2
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48
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March 3, 2025
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In which direction is the LCF calculated when using the function differential_expression?
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1
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29
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March 2, 2025
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GIMVI genes imputation
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1
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74
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February 26, 2025
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Set of guidelines for SCVI and VisiumHD data
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0
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88
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February 25, 2025
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Differential Expression and Batch Correction
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1
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215
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February 20, 2025
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SOLO/scVI .train() error related to batch_size?
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6
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1351
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February 20, 2025
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The mean of the the scVI ZINB model distribution (related to supplementary note 3)
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4
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68
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January 29, 2025
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Tensor nan error when training scANVI model
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6
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792
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January 29, 2025
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How to convert R matrix to anndata
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4
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115
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January 17, 2025
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Error loading someone else's SCVI model: no such file (attr.pkl)
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1
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35
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January 13, 2025
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What training datasets are used in the scVI pretrained model (version 2024-07-01)?
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2
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73
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December 23, 2024
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Issue with model.train() in scVI - Training Stuck at 0%
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1
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145
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December 15, 2024
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CUDA is available but Training scVI models is too slow
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4
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176
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December 4, 2024
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