Topics tagged scvi

Topic	Replies	Views	Activity
Clustering with scVI latent space scRNA-seq clustering , scvi	1	18	May 26, 2023
AttributeError: module 'jax' has no attribute 'Device' Help scvi	2	34	May 25, 2023
DE analysis with model.SCVI: which lfc indicates gene up-/down-regulation? scvi-tools scvi , diff-exp	2	355	September 15, 2022
Extract cell name from scvi dataset Help scvi	2	28	May 11, 2023
Not sure if scvi is using my GPU or not scRNA-seq scvi , integration	6	88	May 9, 2023
scArches with multiple covariates scvi-tools scvi , integration , scarches	3	80	May 5, 2023
Working with Multiple samples with PEAKVI scvi-tools scvi , scatac-seq , peakvi	1	56	May 5, 2023
Validation loss lower than the training loss in scvi scvi-tools integration , scvi	6	140	May 4, 2023
Problems importing scvi [Windows] scvi-tools scvi	17	1329	May 3, 2023
Dataset integration and analysis scvi-tools totalvi , integration , cellassign , scvi , multivi	3	104	May 3, 2023
Analyse sub-sections of a spatial visium slide scanpy scvi	0	47	April 28, 2023
Choosing a Batch Key scvi-tools scvi , integration	2	110	April 18, 2023
_base_model.load() throwing weird errors when loading saved model scvi-tools scvi	4	70	April 10, 2023
What is the best way to extract a "full" batch effect corrected count matrix from scVI model? scvi-tools scvi	2	497	April 7, 2023
No unique function for adata.obs scanpy scvi	1	71	April 7, 2023
UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored scanpy scvi , developer	6	1403	April 4, 2023
About model.differential analysis scvi-tools scvi , diff-exp	0	70	March 26, 2023
Tuning/setting scvi.model.SCVI parameters scvi-tools scvi	9	478	March 25, 2023
DE analysis between two batch-specific clusters scvi-tools diff-exp , scvi	9	314	March 24, 2023
How to specify batch correction for 7 samples from two bacthes? scvi-tools scvi	2	124	March 15, 2023
Mini-batching error after registering MuData .varm field with custom scvi-tools model scvi-tools developer , scvi	1	77	March 1, 2023
How to interpret vae.train() progress bar? scvi-tools scvi	1	99	February 23, 2023
Minimum number of cells for scVI? scvi-tools scvi	2	103	February 15, 2023
Generate cell expression from latent space directly scvi-tools scvi	0	86	February 12, 2023
scVI access the model scvi-tools integration , scvi , developer	4	133	February 9, 2023
Unstable result scvi-tools scvi	0	94	February 1, 2023
Transform_batch parameter of scVI's get_normalized_expression scvi-tools scvi	2	120	January 28, 2023
Ambient RNA Filtering with scAR prior to scVI scvi-tools scvi	1	204	January 23, 2023
Re-integrate after removing low-quality cells? scvi-tools scvi	2	119	January 23, 2023
Best way to rank genes for GSEA analysis scvi-tools scvi , diff-exp	1	175	January 23, 2023