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Is it possible to add extra covariate categories to a trained SCVI model?
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3
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13
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October 4, 2024
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Scvi-tools and xenium
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6
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75
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September 25, 2024
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Embedding number for visualization
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10
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33
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September 23, 2024
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scArches with multiple covariates
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9
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598
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September 22, 2024
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scVI reproducibility seed issue
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4
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653
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September 19, 2024
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Doublet removal: solo model train error
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13
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41
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August 29, 2024
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Pre-defined validation data
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1
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13
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August 27, 2024
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How to compare different parameter sets using the validation loss?
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6
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366
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August 26, 2024
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Scvi - denoising single-cell/single-nucleus transcription data
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3
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99
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August 8, 2024
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scVI integration set batch_key and poor Umap result
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3
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51
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August 7, 2024
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Is the output of `get_normalized_expression` batch-corrected or not?
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2
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57
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August 5, 2024
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Different UMAPs for same dataset with scANVI
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6
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44
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July 22, 2024
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Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix'
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4
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133
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July 21, 2024
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Error with DefaultAssay in R when Integrating Data Using scvi-tools
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4
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82
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July 16, 2024
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New scvi-tools version using SOLO returns probabilities, how to return logits like in version 1.1.2
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7
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66
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July 2, 2024
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The output of scANVI
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2
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113
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June 19, 2024
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Differential expression with scvi - batch correction?
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1
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130
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June 19, 2024
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Question about differential expression and the batch_correction usage
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0
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119
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June 7, 2024
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Best way to rank genes for GSEA analysis
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3
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714
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June 5, 2024
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scVI 21618 problem
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2
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169
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June 5, 2024
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Training split conditioned on batch_key
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3
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123
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May 22, 2024
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Issue importing sysVI
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2
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130
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May 17, 2024
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Generating gene expression from latent vectors
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1
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84
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May 15, 2024
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Insufficient batch correction for certain cell-types
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8
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295
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May 15, 2024
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Scvi.data.organize_multiome_anndatas with two big anndata objects
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1
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112
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May 3, 2024
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Inquiry about Data Input and DE Analysis Details in scVI
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4
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198
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May 3, 2024
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Computing neighbors from X_scANVI representation
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5
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274
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April 26, 2024
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Benchmarking CellHint with scib-metrics Benchmarker tool how to use embedding_obsm_keys
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1
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125
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April 25, 2024
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Confused about hyperparam tuning in scVI
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1
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202
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April 25, 2024
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Scvi model training after sub-clustering
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1
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161
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April 25, 2024
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