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Question about complex experiment
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0
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8
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November 14, 2025
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Clarification on the random variable W in the decoder
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2
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20
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November 11, 2025
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Training not using the full GPU
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3
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26
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November 10, 2025
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Question about get_normalized_expression computation
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3
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47
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November 5, 2025
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Same scVI model with different values on mac silicon and linux?!
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1
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21
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November 4, 2025
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Excluding Ig and ribosomal genes from HVG selection in scVI, best practice?
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1
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53
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October 22, 2025
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How to handle batch effects within the query dataset when using scArches + SCVI?
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1
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66
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July 31, 2025
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Implementing Warmup to a component based on epoch
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2
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46
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July 31, 2025
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Deconvolute spatial transcriptomics (visium) with unannotated single-cell (10x)
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3
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82
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July 10, 2025
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Does MultiVI support using tile matrix directly instead of peak calling for ATAC input?
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2
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61
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July 9, 2025
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DestVI.from_rna_model RuntimeError: Error(s) in loading state_dict for FCLayers
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1
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43
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July 9, 2025
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Shared cell types not mixing when integrating datasets from different species
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4
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145
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June 19, 2025
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Domain adaptation to pre-train batch correction model using paired data
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12
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169
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May 27, 2025
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scVI batch correction clusters all cells from sample in a circle (potential artifact)
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14
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156
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June 3, 2025
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Scvi package can't be installed into google colab?
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6
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94
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April 20, 2025
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Is the scVI model applicable to bulk RNA-seq data from cell lines?
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1
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111
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April 16, 2025
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How should I calculate the knn entropy using the leiden clusters?
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1
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39
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April 10, 2025
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inferCNVpy after running scVI with batch as key
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5
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885
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March 24, 2025
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Error when running scvi.data.add_dna_sequence
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1
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68
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March 18, 2025
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SysVI model and normalized expression
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1
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123
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March 15, 2025
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Scvi-tools and xenium
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7
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606
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March 13, 2025
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Parameters in training model for integrating datasets with scVI in R
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13
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146
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March 9, 2025
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Issue with scVI model device
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2
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70
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March 3, 2025
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In which direction is the LCF calculated when using the function differential_expression?
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1
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41
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March 2, 2025
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GIMVI genes imputation
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1
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103
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February 26, 2025
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Set of guidelines for SCVI and VisiumHD data
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0
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107
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February 25, 2025
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Differential Expression and Batch Correction
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1
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230
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February 20, 2025
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SOLO/scVI .train() error related to batch_size?
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6
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1373
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February 20, 2025
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The mean of the the scVI ZINB model distribution (related to supplementary note 3)
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4
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108
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January 29, 2025
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Tensor nan error when training scANVI model
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6
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805
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January 29, 2025
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