Normalized data found instead of raw counts
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2
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27
|
March 18, 2024
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Remove outliers from trained scVI model
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0
|
22
|
March 16, 2024
|
Extracting Normalized Expression from Trained Model on Variable Subset
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2
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23
|
March 14, 2024
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Access to each training example's original index in the input Anndata object
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0
|
23
|
March 12, 2024
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TCR and BCR genes and HVGs selection
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1
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34
|
March 6, 2024
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How to interpret the latent space in scVI
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6
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254
|
March 5, 2024
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Explicit Access to the Training Set During scVI Training
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0
|
29
|
March 4, 2024
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Unexpected Effect of Augmentations on scVI Batch Integration
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0
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188
|
March 2, 2024
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Incorporating augmentations (per batch) for scVI training
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11
|
151
|
February 28, 2024
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Reloading saved model gives different results
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7
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117
|
February 20, 2024
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Preserving biological variability in scVI sample integration
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4
|
120
|
February 16, 2024
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Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
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1
|
82
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February 16, 2024
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Failure to remove a batch_key/ effect of number of LVs
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6
|
149
|
February 9, 2024
|
Scvi and subtyping
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1
|
108
|
February 9, 2024
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Computing neighbors from X_scANVI representation
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0
|
60
|
February 4, 2024
|
AttributeError: module 'jax' has no attribute 'Device'
|
|
9
|
2831
|
January 31, 2024
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How to compare different parameter sets using the validation loss?
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3
|
118
|
January 31, 2024
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Preparing data for training of a classifier while preserving biological signal
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0
|
70
|
January 27, 2024
|
scVI dropout, need for it?
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2
|
114
|
January 10, 2024
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Attribute Error while training simplescvi on tutorial lung data. Differences to full scvi?
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2
|
85
|
January 9, 2024
|
Option to plot separate umaps for concatenated datasets
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4
|
135
|
December 27, 2023
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Clustering on the scVI latent space generates only gray-colored cells
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4
|
115
|
December 24, 2023
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Kernel dies when training simple SCVI on mac m3
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|
1
|
102
|
December 20, 2023
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How to use normalised expression
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|
0
|
134
|
December 19, 2023
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Predicting of unassigned cells using scANVI
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|
0
|
96
|
December 10, 2023
|
scVI integration with all genes
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|
0
|
141
|
December 5, 2023
|
Suggestion on parameters for training scvi model
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|
3
|
279
|
December 4, 2023
|
UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored
|
|
8
|
5565
|
December 1, 2023
|
Compatibility between scVI and SCENIC
|
|
10
|
344
|
November 28, 2023
|
Setting num_workers in DataLoader for improving train performance
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|
2
|
269
|
November 21, 2023
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