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How to set DataLoader(drop_last=True) for a model?
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3
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29
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September 21, 2022
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Progress not reporting loss from custom training plan
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2
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14
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September 21, 2022
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Difference between `TrainingPlan.log()` vs `TrainingPlan.compute_and_log_metrics()`?
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0
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17
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September 20, 2022
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Calls to decoder.forward() in VAE.generative() wrt the current DecoderSCVI API?
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0
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18
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September 15, 2022
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DE analysis with model.SCVI: which lfc indicates gene up-/down-regulation?
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2
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40
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September 15, 2022
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multiVI and totalVI modal integration question
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0
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25
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September 15, 2022
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Best practices for processing/analyzing large scale scrna-seq datasets across multiple days
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2
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68
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September 15, 2022
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Motivation for `max_epochs = np.min([round((20000 / n_cells) * 400), 400])`?
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3
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33
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September 12, 2022
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DE analysis stochasticity
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5
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75
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September 11, 2022
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Directly accessing scVI's decoder
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10
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356
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September 8, 2022
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__init__() got an unexpected keyword argument 'location' Error
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2
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38
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September 2, 2022
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`tests/models/test_pyro.py::test_pyro_bayesian_save_load` fails
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2
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30
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August 26, 2022
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Help understanding inheritance for scvi.models
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1
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35
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August 22, 2022
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Help: My scvi does not work at all
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4
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70
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August 11, 2022
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Spatial datasets integration
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2
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98
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August 8, 2022
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Why train VAE twice
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1
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268
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August 8, 2022
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Advice regarding complex multimodal integration/analysis strategy
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0
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43
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July 28, 2022
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Freezing layers: register_hook vs. requires_grad
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1
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55
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July 3, 2022
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Passing cell neighbor indices to my encoder
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4
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70
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June 29, 2022
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How to extract batch-corrected expression matrix from trained scVI vae model
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5
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284
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June 20, 2022
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DestVI Tensor Nan Error
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5
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94
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June 14, 2022
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Batch correction with covariate preservation
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2
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106
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June 13, 2022
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DE analysis between two batch-specific clusters
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8
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177
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June 12, 2022
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Error when training SCVI on reference data
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4
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61
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June 4, 2022
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Scvi-tools in DE benchmarking papers?
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2
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102
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May 27, 2022
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CellAssign keyword error: After Integration
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3
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79
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May 26, 2022
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What model to use when integrating batches of scRNA-seq matrices containing >150,000 T and innate lymphoid cell (ILC) sub-populations
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7
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113
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May 26, 2022
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Loading file formats different than AnnData
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1
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60
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May 25, 2022
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Consistent results when using scvi.model.SCVI
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3
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79
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May 11, 2022
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Negative binomial regression on numerical variables
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0
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75
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May 3, 2022
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