Clustering with scVI latent space
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1
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18
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May 26, 2023
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AttributeError: module 'jax' has no attribute 'Device'
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2
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34
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May 25, 2023
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DE analysis with model.SCVI: which lfc indicates gene up-/down-regulation?
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2
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355
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September 15, 2022
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Extract cell name from scvi dataset
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2
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28
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May 11, 2023
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Not sure if scvi is using my GPU or not
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6
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88
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May 9, 2023
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scArches with multiple covariates
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3
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80
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May 5, 2023
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Working with Multiple samples with PEAKVI
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1
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56
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May 5, 2023
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Validation loss lower than the training loss in scvi
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6
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140
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May 4, 2023
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Problems importing scvi [Windows]
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17
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1329
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May 3, 2023
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Dataset integration and analysis
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3
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104
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May 3, 2023
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Analyse sub-sections of a spatial visium slide
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0
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47
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April 28, 2023
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Choosing a Batch Key
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2
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110
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April 18, 2023
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_base_model.load() throwing weird errors when loading saved model
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4
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70
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April 10, 2023
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What is the best way to extract a "full" batch effect corrected count matrix from scVI model?
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2
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497
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April 7, 2023
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No unique function for adata.obs
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1
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71
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April 7, 2023
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UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored
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6
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1403
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April 4, 2023
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About model.differential analysis
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0
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70
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March 26, 2023
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Tuning/setting scvi.model.SCVI parameters
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9
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478
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March 25, 2023
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DE analysis between two batch-specific clusters
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9
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314
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March 24, 2023
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How to specify batch correction for 7 samples from two bacthes?
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2
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124
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March 15, 2023
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Mini-batching error after registering MuData .varm field with custom scvi-tools model
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1
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77
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March 1, 2023
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How to interpret vae.train() progress bar?
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1
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99
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February 23, 2023
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Minimum number of cells for scVI?
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2
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103
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February 15, 2023
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Generate cell expression from latent space directly
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0
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86
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February 12, 2023
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scVI access the model
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4
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133
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February 9, 2023
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Unstable result
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0
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94
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February 1, 2023
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Transform_batch parameter of scVI's get_normalized_expression
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2
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120
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January 28, 2023
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Ambient RNA Filtering with scAR prior to scVI
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1
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204
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January 23, 2023
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Re-integrate after removing low-quality cells?
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2
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119
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January 23, 2023
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Best way to rank genes for GSEA analysis
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1
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175
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January 23, 2023
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