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Problems with Bayes factors and LFC changes using model.differential_expression()
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6
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97
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May 28, 2025
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In which direction is the LCF calculated when using the function differential_expression?
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1
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24
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March 2, 2025
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Scvi-tools: different DEGs when comparing same data
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2
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75
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November 19, 2024
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scVI integration set batch_key and poor Umap result
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3
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184
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August 7, 2024
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Question about differential expression and the batch_correction usage
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0
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163
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June 7, 2024
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Best way to rank genes for GSEA analysis
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3
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863
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June 5, 2024
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Inquiry about Data Input and DE Analysis Details in scVI
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4
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254
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May 3, 2024
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Differential expression genes: test to use?
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0
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314
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April 2, 2024
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Mismatch between MAST DE results and dotplot
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0
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161
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January 9, 2024
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Different DEG results after loading .h5ad
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0
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312
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August 19, 2023
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How to use lvm-DE
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3
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442
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June 2, 2023
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DE analysis with model.SCVI: which lfc indicates gene up-/down-regulation?
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2
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923
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September 15, 2022
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About model.differential analysis
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0
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297
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March 26, 2023
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DE analysis between two batch-specific clusters
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9
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718
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March 24, 2023
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3 sets of CITE-Seq data, how to concatenate or make single file for further analysis?
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0
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458
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February 7, 2023
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"Vanilla" vs "Change" Mode in Differential Expression
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2
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322
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January 17, 2023
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DE between conditions in a cluster
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4
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573
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December 14, 2022
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Marker gene selection: rank_marker_genes vs diffxpy
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0
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612
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November 17, 2022
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How experminetal is the experimental API?
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0
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276
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October 7, 2022
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Scvi-tools in DE benchmarking papers?
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2
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376
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May 27, 2022
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Differentially expressed genes between two Leiden clusters
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8
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1127
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October 15, 2021
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Differential expression between datasets
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4
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1040
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May 20, 2021
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Differential Gene Expression
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2
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797
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March 20, 2021
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