Hi,
I would like to give a try to lvm-DE for my analyses.
But unfortunately, I couldn’t find documentation neither a function.
Any advice would be appreciated!
Best,
Romain
Hi,
I would like to give a try to lvm-DE for my analyses.
But unfortunately, I couldn’t find documentation neither a function.
Any advice would be appreciated!
Best,
Romain
Thank you for your prompt answer!
Trying to set up the weight parameter in an into an issue:
TypeError: get_bayes_factors() got an unexpected keyword argument ‘weights’
I am on sci-tools 0.20.3
do you have any idea how I could fix this
I am using this command:
de_df = model.differential_expression(
groupby=“leiden_scVI”, weights=‘importance’,
delta=None, fdr_target=0.01,
)
So I managed to make it works using the beta version :
pip install scvi-tools==1.0.0-beta.0 --force-reinstall