How to properly save and load a TotalVI trained model that's based on mudata?
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1
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60
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September 7, 2023
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TypeError when trying to set up scvi.model.TOTALVI()
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2
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71
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August 29, 2023
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Increase number of CPU cores for vae.train() in scvi?
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3
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87
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August 28, 2023
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Integration of Multiple Multiome Datasets
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1
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78
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August 18, 2023
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Debugging Issue for CITE-seq analysis with totalVI juytper notebook tutorial
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6
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97
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June 21, 2023
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Totalvi failing to write an h5mu objecy
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7
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81
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May 10, 2023
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Dataset integration and analysis
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3
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235
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May 3, 2023
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totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data
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3
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394
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March 9, 2023
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3 sets of CITE-Seq data, how to concatenate or make single file for further analysis?
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0
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168
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February 7, 2023
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multiVI and totalVI modal integration question
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0
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233
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September 15, 2022
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TotalVI log normalization and non-negativity
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4
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228
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September 11, 2022
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Error in scvi.model.TOTALVI.setup_anndata when loading protein-only data
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5
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304
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August 25, 2022
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Advice regarding complex multimodal integration/analysis strategy
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0
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195
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July 28, 2022
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The totalVI DE test; gene names
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2
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186
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May 24, 2022
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ScArches-TotalVI reproducibility
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15
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435
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May 19, 2022
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TotalVI- ADT filtering and zero value markers
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0
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207
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April 26, 2022
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All genes or highly variable genes?
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10
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1228
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March 31, 2022
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Regressing out isotype controls
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3
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376
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March 24, 2022
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Loading external CITE-seq anndata with argument `mask_protein_batches`?
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1
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221
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March 11, 2022
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totalVI tutorial of integration of CITE-seq datasets in R
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2
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258
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February 15, 2022
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TotalVI probabilistic model
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4
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305
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November 4, 2021
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Differentially expressed genes between two Leiden clusters
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8
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540
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October 15, 2021
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Comparing steps of Scanpy for scRNQ-seq and totalvi for CITE-seq
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6
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428
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October 8, 2021
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Get_normalized_expression function arguments
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9
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1059
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September 11, 2021
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Using TOTALVI with the AUCell package
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6
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308
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August 17, 2021
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totalVI workflow
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12
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413
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August 1, 2021
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Preparing data for totalVI
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11
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786
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July 30, 2021
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Running TOTALVI data in which subset of cells do not have citeseq data
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8
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366
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March 25, 2021
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