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Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression
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2
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37
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July 10, 2025
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Workflow advice for totalVI in CITE-seq Multiplexed data
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3
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53
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June 19, 2025
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Regressing out isotype controls
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4
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807
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June 6, 2025
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Help on MultiVI for data modality
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1
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191
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May 16, 2025
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TotalVI not fully integrating CITEseq cells with GEX and missing protein values
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1
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38
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February 6, 2025
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Impact of batch on TotalVI results
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1
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67
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January 5, 2025
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[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC?
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1
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68
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October 17, 2024
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N_samples ( refers to Monte Carlo sampling for each cell) setting in totalVI
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1
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71
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June 28, 2024
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Failing to import SCVI-tools modules: has AnnDatasetFromAnnData been replaced?
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2
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68
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June 27, 2024
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Integration of Multiple Multiome Datasets
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5
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704
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March 6, 2024
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Questions about scib weight choice
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0
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191
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December 5, 2023
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Vae_q.latent_space_classifer_ not found in totalVI CITE-seq reference mapping tutorial
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3
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208
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November 20, 2023
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Multi-omics scANVI
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1
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211
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November 14, 2023
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RuntimeWarning: The lr scheduler dict contains the key(s)
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0
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238
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October 23, 2023
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How to properly save and load a TotalVI trained model that's based on mudata?
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1
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813
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September 7, 2023
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TypeError when trying to set up scvi.model.TOTALVI()
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2
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361
|
August 29, 2023
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Increase number of CPU cores for vae.train() in scvi?
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3
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872
|
August 28, 2023
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Debugging Issue for CITE-seq analysis with totalVI juytper notebook tutorial
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6
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339
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June 21, 2023
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Totalvi failing to write an h5mu objecy
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7
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285
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May 10, 2023
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Dataset integration and analysis
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3
|
878
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May 3, 2023
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totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data
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3
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794
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March 9, 2023
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3 sets of CITE-Seq data, how to concatenate or make single file for further analysis?
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0
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466
|
February 7, 2023
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multiVI and totalVI modal integration question
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0
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474
|
September 15, 2022
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TotalVI log normalization and non-negativity
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4
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469
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September 11, 2022
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Error in scvi.model.TOTALVI.setup_anndata when loading protein-only data
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5
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749
|
August 25, 2022
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Advice regarding complex multimodal integration/analysis strategy
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0
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389
|
July 28, 2022
|
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The totalVI DE test; gene names
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2
|
374
|
May 24, 2022
|
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ScArches-TotalVI reproducibility
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|
15
|
780
|
May 19, 2022
|
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TotalVI- ADT filtering and zero value markers
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0
|
363
|
April 26, 2022
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All genes or highly variable genes?
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10
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3681
|
March 31, 2022
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