Totalvi failing to write an h5mu objecy
|
|
7
|
25
|
May 10, 2023
|
Dataset integration and analysis
|
|
3
|
104
|
May 3, 2023
|
totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data
|
|
3
|
322
|
March 9, 2023
|
3 sets of CITE-Seq data, how to concatenate or make single file for further analysis?
|
|
0
|
89
|
February 7, 2023
|
multiVI and totalVI modal integration question
|
|
0
|
159
|
September 15, 2022
|
TotalVI log normalization and non-negativity
|
|
4
|
172
|
September 11, 2022
|
Error in scvi.model.TOTALVI.setup_anndata when loading protein-only data
|
|
5
|
167
|
August 25, 2022
|
Advice regarding complex multimodal integration/analysis strategy
|
|
0
|
138
|
July 28, 2022
|
The totalVI DE test; gene names
|
|
2
|
137
|
May 24, 2022
|
ScArches-TotalVI reproducibility
|
|
15
|
305
|
May 19, 2022
|
TotalVI- ADT filtering and zero value markers
|
|
0
|
156
|
April 26, 2022
|
All genes or highly variable genes?
|
|
10
|
776
|
March 31, 2022
|
Regressing out isotype controls
|
|
3
|
250
|
March 24, 2022
|
Loading external CITE-seq anndata with argument `mask_protein_batches`?
|
|
1
|
150
|
March 11, 2022
|
totalVI tutorial of integration of CITE-seq datasets in R
|
|
2
|
178
|
February 15, 2022
|
TotalVI probabilistic model
|
|
4
|
248
|
November 4, 2021
|
Differentially expressed genes between two Leiden clusters
|
|
8
|
405
|
October 15, 2021
|
Comparing steps of Scanpy for scRNQ-seq and totalvi for CITE-seq
|
|
6
|
318
|
October 8, 2021
|
Get_normalized_expression function arguments
|
|
9
|
727
|
September 11, 2021
|
Using TOTALVI with the AUCell package
|
|
6
|
249
|
August 17, 2021
|
totalVI workflow
|
|
12
|
299
|
August 1, 2021
|
Preparing data for totalVI
|
|
11
|
585
|
July 30, 2021
|
Running TOTALVI data in which subset of cells do not have citeseq data
|
|
8
|
318
|
March 25, 2021
|