Topics tagged totalvi

Topic	Replies	Views	Activity
How to properly save and load a TotalVI trained model that's based on mudata? muon totalvi	1	60	September 7, 2023
TypeError when trying to set up scvi.model.TOTALVI() scvi-tools totalvi	2	71	August 29, 2023
Increase number of CPU cores for vae.train() in scvi? scvi-tools scvi , totalvi	3	87	August 28, 2023
Integration of Multiple Multiome Datasets Multiome integration , multivi , totalvi	1	78	August 18, 2023
Debugging Issue for CITE-seq analysis with totalVI juytper notebook tutorial scvi-tools scvi , totalvi , developer	6	97	June 21, 2023
Totalvi failing to write an h5mu objecy scvi-tools totalvi	7	81	May 10, 2023
Dataset integration and analysis scvi-tools integration , cellassign , scvi , multivi , totalvi	3	235	May 3, 2023
totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data scvi-tools multivi , totalvi , modeling	3	394	March 9, 2023
3 sets of CITE-Seq data, how to concatenate or make single file for further analysis? muon integration , scanvi , diff-exp , multivi , totalvi	0	168	February 7, 2023
multiVI and totalVI modal integration question scvi-tools scvi , multivi , totalvi	0	233	September 15, 2022
TotalVI log normalization and non-negativity scvi-tools totalvi	4	228	September 11, 2022
Error in scvi.model.TOTALVI.setup_anndata when loading protein-only data scvi-tools totalvi	5	304	August 25, 2022
Advice regarding complex multimodal integration/analysis strategy General integration , scanvi , scvi , multivi , totalvi	0	195	July 28, 2022
The totalVI DE test; gene names scvi-tools totalvi	2	186	May 24, 2022
ScArches-TotalVI reproducibility scArches integration , totalvi	15	435	May 19, 2022
TotalVI- ADT filtering and zero value markers scvi-tools totalvi	0	207	April 26, 2022
All genes or highly variable genes? scvi-tools gene-selection , scvi , totalvi	10	1228	March 31, 2022
Regressing out isotype controls CITE-seq totalvi	3	376	March 24, 2022
Loading external CITE-seq anndata with argument `mask_protein_batches`? scvi-tools totalvi	1	221	March 11, 2022
totalVI tutorial of integration of CITE-seq datasets in R scvi-tools integration , totalvi	2	258	February 15, 2022
TotalVI probabilistic model scvi-tools totalvi	4	305	November 4, 2021
Differentially expressed genes between two Leiden clusters scvi-tools diff-exp , totalvi	8	540	October 15, 2021
Comparing steps of Scanpy for scRNQ-seq and totalvi for CITE-seq scvi-tools totalvi	6	428	October 8, 2021
Get_normalized_expression function arguments scvi-tools totalvi	9	1059	September 11, 2021
Using TOTALVI with the AUCell package scvi-tools totalvi	6	308	August 17, 2021
totalVI workflow scvi-tools totalvi	12	413	August 1, 2021
Preparing data for totalVI scvi-tools totalvi , preprocessing	11	786	July 30, 2021
Running TOTALVI data in which subset of cells do not have citeseq data scvi-tools integration , totalvi	8	366	March 25, 2021