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About the General category
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0
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636
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July 7, 2021
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Deconvolute spatial transcriptomics (visium) with unannotated single-cell (10x)
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3
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26
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July 10, 2025
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Cellxgene datasets raw data? scaled?
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2
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20
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July 8, 2025
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Regressing out isotype controls
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4
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802
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June 6, 2025
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Tutorial Scanpy X ReadStore Integration for NGS Project Management
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0
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9
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February 25, 2025
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How to concatenate andata objects when you have citeseq data
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5
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62
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January 29, 2025
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Does the order of HTOs matter?
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0
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27
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January 7, 2025
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Looking for Pseudobulk Methods
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1
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93
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November 17, 2024
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How to load GEO datasets for analysis using Scanpy / Scvi tools?
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6
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1968
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November 6, 2024
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Gene Regulatory Network in scverse
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2
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1093
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October 20, 2024
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[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC?
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1
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67
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October 17, 2024
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Release of scvi-tools version 1.2
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1
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73
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August 26, 2024
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ST: clustering on each tissue section or clustering on all combined in anndata object?
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0
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27
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August 19, 2024
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Teaching resources relating to scverse ecosystem?
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0
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49
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August 17, 2024
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Questions about how to do DE with one replicate for one sample
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0
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149
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July 31, 2024
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Give your feedback on new visualization tools for Spatial data…
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1
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66
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July 25, 2024
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Filtering by coordinate system
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0
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96
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May 12, 2024
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Normalizing scATACseq data
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1
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238
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April 23, 2024
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Using Git/Github for version control of single cell analysis
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2
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149
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April 16, 2024
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Integration of Multiple Multiome Datasets
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5
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700
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March 6, 2024
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Scanpy 1.10 release candidate
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0
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188
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February 23, 2024
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Release: scvi-tools 1.1.0
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0
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208
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February 13, 2024
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[Network inferences] Predicting cell-cell and cell-protein interactions using multiomics data?
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0
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149
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January 20, 2024
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Questions about scib weight choice
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0
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190
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December 5, 2023
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Visualisation of ATAC seq data in Python
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0
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647
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November 21, 2023
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Trajectory inference on multiple samples (e.g. with CellRank)
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0
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276
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November 20, 2023
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Scib-metrics error with "ValueError: Each cell must have the same number of neighbors."
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0
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307
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November 5, 2023
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Training ML model for classifying cell types based on several annotated datasets
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0
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189
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October 25, 2023
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Visualization software compatible with Python/AnnData
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2
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259
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October 18, 2023
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Anndata 0.10 released!
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0
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635
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October 9, 2023
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