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About the General category
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0
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624
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July 7, 2021
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Looking for Pseudobulk Methods
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1
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20
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November 17, 2024
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How to load GEO datasets for analysis using Scanpy / Scvi tools?
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6
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1681
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November 6, 2024
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Gene Regulatory Network in scverse
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2
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940
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October 20, 2024
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[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC?
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1
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30
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October 17, 2024
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Release of scvi-tools version 1.2
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1
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50
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August 26, 2024
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ST: clustering on each tissue section or clustering on all combined in anndata object?
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0
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15
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August 19, 2024
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Teaching resources relating to scverse ecosystem?
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0
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40
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August 17, 2024
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Questions about how to do DE with one replicate for one sample
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0
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61
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July 31, 2024
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Give your feedback on new visualization tools for Spatial data…
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1
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44
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July 25, 2024
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Filtering by coordinate system
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0
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87
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May 12, 2024
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Normalizing scATACseq data
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1
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137
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April 23, 2024
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Using Git/Github for version control of single cell analysis
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2
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140
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April 16, 2024
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Integration of Multiple Multiome Datasets
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5
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581
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March 6, 2024
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Scanpy 1.10 release candidate
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0
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170
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February 23, 2024
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Release: scvi-tools 1.1.0
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0
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196
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February 13, 2024
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[Network inferences] Predicting cell-cell and cell-protein interactions using multiomics data?
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0
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142
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January 20, 2024
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Questions about scib weight choice
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0
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184
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December 5, 2023
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Visualisation of ATAC seq data in Python
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0
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545
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November 21, 2023
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Trajectory inference on multiple samples (e.g. with CellRank)
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0
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247
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November 20, 2023
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Scib-metrics error with "ValueError: Each cell must have the same number of neighbors."
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0
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290
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November 5, 2023
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Training ML model for classifying cell types based on several annotated datasets
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0
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182
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October 25, 2023
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Visualization software compatible with Python/AnnData
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2
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233
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October 18, 2023
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Anndata 0.10 released!
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0
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615
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October 9, 2023
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Imaging data from seurat to scanpy
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1
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821
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October 4, 2023
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DEG pattern while using unspliced and nuclear counts
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0
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212
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July 19, 2023
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Cell-Cell Interactions
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0
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270
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July 5, 2023
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COMPASS Installation tutorial - CPLEX Installation
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0
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271
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June 19, 2023
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Not sure if scvi is using my GPU or not
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7
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1059
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June 13, 2023
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Clustering with scVI latent space
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1
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418
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May 26, 2023
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