|
About the General category
|
|
0
|
629
|
July 7, 2021
|
|
How to concatenate andata objects when you have citeseq data
|
|
5
|
34
|
January 29, 2025
|
|
Does the order of HTOs matter?
|
|
0
|
16
|
January 7, 2025
|
|
Looking for Pseudobulk Methods
|
|
1
|
44
|
November 17, 2024
|
|
How to load GEO datasets for analysis using Scanpy / Scvi tools?
|
|
6
|
1758
|
November 6, 2024
|
|
Gene Regulatory Network in scverse
|
|
2
|
982
|
October 20, 2024
|
|
[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC?
|
|
1
|
36
|
October 17, 2024
|
|
Release of scvi-tools version 1.2
|
|
1
|
57
|
August 26, 2024
|
|
ST: clustering on each tissue section or clustering on all combined in anndata object?
|
|
0
|
20
|
August 19, 2024
|
|
Teaching resources relating to scverse ecosystem?
|
|
0
|
43
|
August 17, 2024
|
|
Questions about how to do DE with one replicate for one sample
|
|
0
|
89
|
July 31, 2024
|
|
Give your feedback on new visualization tools for Spatial data…
|
|
1
|
50
|
July 25, 2024
|
|
Filtering by coordinate system
|
|
0
|
90
|
May 12, 2024
|
|
Normalizing scATACseq data
|
|
1
|
169
|
April 23, 2024
|
|
Using Git/Github for version control of single cell analysis
|
|
2
|
142
|
April 16, 2024
|
|
Integration of Multiple Multiome Datasets
|
|
5
|
618
|
March 6, 2024
|
|
Scanpy 1.10 release candidate
|
|
0
|
177
|
February 23, 2024
|
|
Release: scvi-tools 1.1.0
|
|
0
|
201
|
February 13, 2024
|
|
[Network inferences] Predicting cell-cell and cell-protein interactions using multiomics data?
|
|
0
|
143
|
January 20, 2024
|
|
Questions about scib weight choice
|
|
0
|
184
|
December 5, 2023
|
|
Visualisation of ATAC seq data in Python
|
|
0
|
570
|
November 21, 2023
|
|
Trajectory inference on multiple samples (e.g. with CellRank)
|
|
0
|
256
|
November 20, 2023
|
|
Scib-metrics error with "ValueError: Each cell must have the same number of neighbors."
|
|
0
|
293
|
November 5, 2023
|
|
Training ML model for classifying cell types based on several annotated datasets
|
|
0
|
188
|
October 25, 2023
|
|
Visualization software compatible with Python/AnnData
|
|
2
|
240
|
October 18, 2023
|
|
Anndata 0.10 released!
|
|
0
|
625
|
October 9, 2023
|
|
Imaging data from seurat to scanpy
|
|
1
|
850
|
October 4, 2023
|
|
DEG pattern while using unspliced and nuclear counts
|
|
0
|
213
|
July 19, 2023
|
|
Cell-Cell Interactions
|
|
0
|
275
|
July 5, 2023
|
|
COMPASS Installation tutorial - CPLEX Installation
|
|
0
|
274
|
June 19, 2023
|