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About the General category
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0
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644
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July 7, 2021
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What to do with small clusters outside larger clusters in UMAP? Remove or keep?
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2
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13
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February 10, 2026
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[Tool] scVAE-Annotator: Automated Cell Type Annotation for scRNA-seq with VAE and Adaptive Marker Discovery
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7
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46
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February 4, 2026
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Pseudobulk after Performing integration with scatlasvae or scVI?
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4
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93
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January 23, 2026
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Proposal: Add TAU Community Detection as a clustering method for Scanpy / scverse ecosystem
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5
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52
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December 15, 2025
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Clarification on the random variable W in the decoder
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2
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49
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November 11, 2025
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MultiVI questions on Integrating Multiple Multiome Datasets
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1
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111
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September 25, 2025
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Preparing adata.uns for cellflow
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0
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55
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August 13, 2025
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How to run cellflow faster?
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0
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61
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August 7, 2025
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Harmony-R vs Harmony-Py
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0
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136
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July 31, 2025
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Deconvolute spatial transcriptomics (visium) with unannotated single-cell (10x)
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3
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147
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July 10, 2025
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Cellxgene datasets raw data? scaled?
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2
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127
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July 8, 2025
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Regressing out isotype controls
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4
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882
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June 6, 2025
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Tutorial Scanpy X ReadStore Integration for NGS Project Management
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0
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33
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February 25, 2025
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How to concatenate andata objects when you have citeseq data
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5
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128
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January 29, 2025
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Does the order of HTOs matter?
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0
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73
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January 7, 2025
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Looking for Pseudobulk Methods
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1
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172
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November 17, 2024
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How to load GEO datasets for analysis using Scanpy / Scvi tools?
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6
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2246
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November 6, 2024
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Gene Regulatory Network in scverse
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2
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1235
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October 20, 2024
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[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC?
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1
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117
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October 17, 2024
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Release of scvi-tools version 1.2
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1
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105
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August 26, 2024
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ST: clustering on each tissue section or clustering on all combined in anndata object?
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0
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46
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August 19, 2024
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Teaching resources relating to scverse ecosystem?
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0
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93
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August 17, 2024
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Questions about how to do DE with one replicate for one sample
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0
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265
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July 31, 2024
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Give your feedback on new visualization tools for Spatial data…
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1
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90
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July 25, 2024
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Filtering by coordinate system
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0
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106
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May 12, 2024
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Normalizing scATACseq data
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1
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333
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April 23, 2024
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Using Git/Github for version control of single cell analysis
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2
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183
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April 16, 2024
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Integration of Multiple Multiome Datasets
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5
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824
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March 6, 2024
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Scanpy 1.10 release candidate
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0
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202
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February 23, 2024
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