Latest General topics

Topic	Replies	Views	Activity
Comparing Clusters of Different Anndata through the use of Dendrogram scRNA-seq	2	679	November 2, 2022
DE analysis stochasticity scRNA-seq scvi	6	424	October 15, 2022
Understanding gimVI loss logits scRNA-seq gimvi	0	267	October 6, 2022
Converting h5 to h5ad files? scATAC-seq	2	2675	September 29, 2022
Label transfer from CITE-seq CITE-seq scarches , scanvi	5	396	September 16, 2022
Best practices for processing/analyzing large scale scrna-seq datasets across multiple days scRNA-seq scvi , integration	2	522	September 15, 2022
How to convert mouse gene_id to Entrez gene ids General	1	930	August 20, 2022
Help: My scvi does not work at all General scvi	4	1585	August 11, 2022
Subset/subcluster and reprocess scRNA-seq	0	731	August 3, 2022
Advice regarding complex multimodal integration/analysis strategy General scvi , multivi , scanvi , integration , totalvi	0	314	July 28, 2022
Question about the markergene score scATAC-seq	0	280	July 20, 2022
Scanpy Ingest Understanding scRNA-seq	0	632	July 8, 2022
HVG selection with multiple batches scRNA-seq	3	717	July 4, 2022
UMI tables using scanpy scRNA-seq	3	513	June 29, 2022
Kallisto feature.tsv file? General	0	292	June 28, 2022
Cell type assigning software/package compatible with scanpy General	1	335	June 18, 2022
Batch correction with covariate preservation scRNA-seq scvi	2	538	June 13, 2022
Prediction of the protein expression based on snRNA-seq General	1	324	June 6, 2022
Plot subsamples in the Anndata scRNA-seq	0	267	June 2, 2022
Scvi-tools in DE benchmarking papers? General diff-exp , scvi	2	334	May 27, 2022
plot different sample regions and different age groups from AnnDat scRNA-seq	0	306	May 24, 2022
Using seurat weigted nearest neighbord graph to compute a Force-directed graph General	2	546	May 23, 2022
Adding trend line to scatter plot? scRNA-seq	1	745	May 7, 2022
Reading in a 1.1 million cell HDF5 dataset scRNA-seq h5	4	797	March 26, 2022
Regressing out isotype controls CITE-seq totalvi	3	606	March 24, 2022
Differential expression of ADT protein CITE-seq	0	351	March 14, 2022
Error in sc.pl.violin with totalVI CITE-seq	0	343	March 14, 2022
Summarizing a multipatient experimental design scRNA-seq	0	414	September 8, 2021
Data preprocessing for scATAC-seq scATAC-seq scatac-seq	4	948	September 10, 2021
Gene filtering prior to batch correction scRNA-seq scrna-seq , integration	2	570	July 9, 2021