Latest General topics

Topic	Replies	Views	Activity
Pseudobulk DE gene Analysis in scverse ecosystem scRNA-seq	10	1345	March 30, 2023
Connectivity score for highly connected cell subtypes General	0	360	December 12, 2022
MultiQC module to parse scanpy/anndata results scRNA-seq	1	394	December 1, 2022
Gene Regulatory Network in scverse scRNA-seq	1	848	November 23, 2022
Pathway Analysis scRNA-seq	16	1576	November 16, 2022
How to load GEO datasets for analysis using Scanpy / Scvi tools? scRNA-seq	4	1531	November 9, 2022
Comparing Clusters of Different Anndata through the use of Dendrogram scRNA-seq	2	808	November 2, 2022
DE analysis stochasticity scRNA-seq scvi	6	463	October 15, 2022
Understanding gimVI loss logits scRNA-seq gimvi	0	300	October 6, 2022
Converting h5 to h5ad files? scATAC-seq	2	3245	September 29, 2022
Label transfer from CITE-seq CITE-seq scarches , scanvi	5	450	September 16, 2022
Best practices for processing/analyzing large scale scrna-seq datasets across multiple days scRNA-seq scvi , integration	2	584	September 15, 2022
How to convert mouse gene_id to Entrez gene ids General	1	1067	August 20, 2022
Help: My scvi does not work at all General scvi	4	1855	August 11, 2022
Subset/subcluster and reprocess scRNA-seq	0	883	August 3, 2022
Advice regarding complex multimodal integration/analysis strategy General scvi , multivi , scanvi , integration , totalvi	0	362	July 28, 2022
Question about the markergene score scATAC-seq	0	308	July 20, 2022
Scanpy Ingest Understanding scRNA-seq	0	734	July 8, 2022
HVG selection with multiple batches scRNA-seq	3	809	July 4, 2022
UMI tables using scanpy scRNA-seq	3	591	June 29, 2022
Kallisto feature.tsv file? General	0	321	June 28, 2022
Cell type assigning software/package compatible with scanpy General	1	366	June 18, 2022
Batch correction with covariate preservation scRNA-seq scvi	2	658	June 13, 2022
Prediction of the protein expression based on snRNA-seq General	1	393	June 6, 2022
Plot subsamples in the Anndata scRNA-seq	0	297	June 2, 2022
Scvi-tools in DE benchmarking papers? General diff-exp , scvi	2	370	May 27, 2022
plot different sample regions and different age groups from AnnDat scRNA-seq	0	340	May 24, 2022
Using seurat weigted nearest neighbord graph to compute a Force-directed graph General	2	610	May 23, 2022
Adding trend line to scatter plot? scRNA-seq	1	848	May 7, 2022
Reading in a 1.1 million cell HDF5 dataset scRNA-seq h5	4	947	March 26, 2022