Hi all,
It seems like ScanPy and EpiScanPy like being fed h5ad files. Is there an easy way to convert from h5 to h5ad? Thanks in advance!
I’m not sure there is a conversion tool but you could create an anndata from scratch with your data and save it as h5ad
https://anndata-tutorials.readthedocs.io/en/latest/getting-started.html
scanpy.read_hdf(filename , key )
will read a .h5 file and return an adata object
https://scanpy.readthedocs.io/en/stable/generated/scanpy.read_hdf.html