I am getting an Error when trying to load a .h5ad file into scanpy:
Exception: File is missing one or more required datasets.
I had a Seurat R object that I converted to a .h5ad file with the R package ‘sceasy’. The conversion seemed to work fine as the output gave a ‘Anndata object’ as shown below:
I am trying to read this into scanpy with the following, but getting the above Error:
adata = sc.read_10x_h5("/path/P2_CD38.h5ad", genome='X')
I am exeprienced with single-cell analyses in R but not python and not sure what to do here. Thanks for any help in advance.