|
Is it possible to add extra covariate categories to a trained SCVI model?
|
|
3
|
13
|
October 4, 2024
|
|
Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI
|
|
7
|
45
|
September 27, 2024
|
|
SCANVI: Label transfer from in vivo reference to in vitro model?
|
|
4
|
648
|
September 15, 2024
|
|
How to assess scanvi annoation transfer effect
|
|
1
|
16
|
September 6, 2024
|
|
Trajectory analysis of combined single-cell and single-nuclei data
|
|
1
|
247
|
September 2, 2024
|
|
SCVI and SCANVI for label transfer how to assess accuracy?
|
|
3
|
57
|
August 20, 2024
|
|
Different UMAPs for same dataset with scANVI
|
|
6
|
44
|
July 22, 2024
|
|
The output of scANVI
|
|
2
|
113
|
June 19, 2024
|
|
How to create scANVI model from a scVI model without labels_key?
|
|
2
|
92
|
June 5, 2024
|
|
Computing neighbors from X_scANVI representation
|
|
5
|
274
|
April 26, 2024
|
|
Benchmarking CellHint with scib-metrics Benchmarker tool how to use embedding_obsm_keys
|
|
1
|
125
|
April 25, 2024
|
|
Encountering Error in Label Transfer : Query Dataset Slightly Larger than Reference Dataset
|
|
3
|
219
|
January 11, 2024
|
|
Predicting of unassigned cells using scANVI
|
|
0
|
223
|
December 10, 2023
|
|
Error in Fine-tuning scANVI Hyperparameters from Pretrained scVI Model
|
|
2
|
344
|
November 20, 2023
|
|
Multi-omics scANVI
|
|
1
|
184
|
November 14, 2023
|
|
Error in Atlas-level-integration-of-lung-data Tutorial
|
|
4
|
347
|
November 1, 2023
|
|
Tensor nan error when training scANVI model
|
|
0
|
597
|
August 11, 2023
|
|
Label transfer with SCVI-SCANVI pipeline changes (predicts wrong) labels in ref data
|
|
8
|
814
|
July 31, 2023
|
|
Supervised training with scanvi does not converge, any clue why?
|
|
0
|
294
|
July 4, 2023
|
|
Scvi-tools label transfer accuracy
|
|
2
|
462
|
June 15, 2023
|
|
scANVI relables known cells with known types incorrectly
|
|
13
|
1668
|
April 18, 2023
|
|
Don't extend labels for query data
|
|
1
|
297
|
March 6, 2023
|
|
3 sets of CITE-Seq data, how to concatenate or make single file for further analysis?
|
|
0
|
428
|
February 7, 2023
|
|
Scanvi best practices
|
|
6
|
1325
|
November 28, 2022
|
|
scANVI fails and returns NaNs after few epochs
|
|
2
|
539
|
November 11, 2022
|
|
SCANVI: cannot reproduce predicted cell types as in the tutorial
|
|
1
|
440
|
October 5, 2022
|
|
Label transfer from CITE-seq
|
|
5
|
452
|
September 16, 2022
|
|
SCANVI soft labeling
|
|
1
|
834
|
August 8, 2022
|
|
Advice regarding complex multimodal integration/analysis strategy
|
|
0
|
362
|
July 28, 2022
|
|
Error in SCANVI.prepare_query_anndata
|
|
5
|
838
|
July 14, 2022
|