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SCANVI Model Loading Issue: Partial Data and Workaround
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1
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9
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January 11, 2026
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Predict cell type with scANVI for spatial transcriptomics data (Xenium)
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7
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165
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December 28, 2025
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Limited cell types in reference dataset for scANVI
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3
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27
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December 4, 2025
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Loss_z1_weight and loss_z1_unweight in scANVI
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3
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501
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November 25, 2025
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Posterior probability interpretability (soft=True)
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1
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60
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September 25, 2025
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Get_normalized_expression causes my kernel to disconnect
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1
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51
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August 19, 2025
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Nan values in the latent of scanvi_query
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1
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59
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April 23, 2025
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Unexpected exception formatting exception when prepare_query_anndata
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4
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235
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March 11, 2025
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Issue with retrain scANVI model
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1
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104
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March 3, 2025
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Function in scanvi that can help compute the probability of having a latent cell state given a cell type
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1
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92
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February 26, 2025
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Tensor nan error when training scANVI model
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6
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846
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January 29, 2025
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Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI
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8
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212
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October 17, 2024
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SCANVI inferred cell types don't make sense
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1
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160
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October 17, 2024
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Is it possible to add extra covariate categories to a trained SCVI model?
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3
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180
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October 4, 2024
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SCANVI: Label transfer from in vivo reference to in vitro model?
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4
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724
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September 15, 2024
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How to assess scanvi annoation transfer effect
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1
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70
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September 6, 2024
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Trajectory analysis of combined single-cell and single-nuclei data
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1
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436
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September 2, 2024
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SCVI and SCANVI for label transfer how to assess accuracy?
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3
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302
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August 20, 2024
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Different UMAPs for same dataset with scANVI
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6
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306
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July 22, 2024
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The output of scANVI
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2
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220
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June 19, 2024
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How to create scANVI model from a scVI model without labels_key?
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2
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168
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June 5, 2024
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Computing neighbors from X_scANVI representation
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5
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478
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April 26, 2024
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Benchmarking CellHint with scib-metrics Benchmarker tool how to use embedding_obsm_keys
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1
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233
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April 25, 2024
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Encountering Error in Label Transfer : Query Dataset Slightly Larger than Reference Dataset
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3
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298
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January 11, 2024
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Predicting of unassigned cells using scANVI
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0
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327
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December 10, 2023
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Error in Fine-tuning scANVI Hyperparameters from Pretrained scVI Model
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2
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464
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November 20, 2023
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Multi-omics scANVI
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1
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263
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November 14, 2023
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Error in Atlas-level-integration-of-lung-data Tutorial
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4
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458
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November 1, 2023
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Label transfer with SCVI-SCANVI pipeline changes (predicts wrong) labels in ref data
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8
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1150
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July 31, 2023
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Supervised training with scanvi does not converge, any clue why?
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0
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353
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July 4, 2023
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