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scANVI relables known cells with known types incorrectly
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13
|
809
|
April 18, 2023
|
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Don't extend labels for query data
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1
|
94
|
March 6, 2023
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3 sets of CITE-Seq data, how to concatenate or make single file for further analysis?
|
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0
|
89
|
February 7, 2023
|
|
Label transfer with SCVI-SCANVI pipeline changes (predicts wrong) labels in ref data
|
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6
|
156
|
December 12, 2022
|
|
Scanvi best practices
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6
|
716
|
November 28, 2022
|
|
scANVI fails and returns NaNs after few epochs
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|
2
|
203
|
November 11, 2022
|
|
SCANVI: cannot reproduce predicted cell types as in the tutorial
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|
1
|
175
|
October 5, 2022
|
|
Label transfer from CITE-seq
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|
5
|
198
|
September 16, 2022
|
|
SCANVI soft labeling
|
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1
|
339
|
August 8, 2022
|
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Advice regarding complex multimodal integration/analysis strategy
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|
0
|
138
|
July 28, 2022
|
|
Error in SCANVI.prepare_query_anndata
|
|
5
|
348
|
July 14, 2022
|
|
Error on scvi_model.train(100) for seed label transfer
|
|
1
|
901
|
June 8, 2022
|
|
Error in scvi.model.SCANVI.load_query_data
|
|
2
|
174
|
June 3, 2022
|
|
SCANVI: Label transfer from adult to embryonic data?
|
|
1
|
180
|
May 17, 2022
|
|
Semi supervised integration update
|
|
2
|
147
|
May 3, 2022
|
|
What was the basis for parameter choices in tutorials?
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|
1
|
253
|
April 29, 2022
|
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SCANVI: Label transfer from in vivo reference to in vitro model?
|
|
2
|
316
|
April 21, 2022
|
|
Creating an atlas for online updating / architectural surgury using scANVI and partially labelled data
|
|
1
|
155
|
April 14, 2022
|
|
Loss_z1_weight and loss_z1_unweight in scANVI
|
|
1
|
199
|
March 23, 2022
|
|
Resume training from model checkpoints
|
|
1
|
224
|
March 18, 2022
|
|
Altering scANVI's Graphical Model
|
|
1
|
148
|
February 25, 2022
|
|
Seed labeling vs Integration and label transfer: highly variable genes
|
|
2
|
227
|
January 20, 2022
|
|
Posterior probability of being assigned to a specific label
|
|
4
|
184
|
July 28, 2021
|
|
API change for SCANVI
|
|
2
|
274
|
March 23, 2021
|