Hi, all
After reanno all cells, I reloaded scVI model (setting labels_key=‘anno’) and set cell_type_key = 'FinalLv1'
. Then setting scanvi_model =
sca.models.SCANVI.from_scvi_model(
vae_model,
adata=source_adata,
labels_key=cell_type_key,
unlabeled_category="Unknown",
)
to train a new scANVI model to predict other data. But, when predicting query adata, model.predict()
returned labels were anno
category. Is it possible to retrain a scANVI model? Is there anything wrong with the scVI model?