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About the Ecosystem category
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0
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733
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March 4, 2022
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Pbcheck 0.1.0: a CLI that audits a scRNA-seq DE design for pseudoreplication
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0
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32
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September 7, 2026
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metal-SingleCell — a work-in-progress Metal/MLX port of rapids-singlecell for Apple Silicon (feedback welcome)
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1
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114
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July 15, 2026
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CellRank for multiome blood development
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0
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42
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July 8, 2026
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Quick question from the Awkward Array project
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3
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98
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June 9, 2026
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Need to compare cell2location (probabilistic approach for deconvolution) to celltrek (spatial mapping approach)
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0
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68
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March 4, 2026
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Use of raw or log-normalised counts in decoupler-py mt.ulm
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2
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212
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January 17, 2026
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ImportError: cannot import name 'run_regression' from 'cell2location'
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3
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670
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October 15, 2025
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How to handle batch effects within the query dataset when using scArches + SCVI?
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1
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207
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July 31, 2025
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Understanding NMF output "mean_nUMI_factorsfact"
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0
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119
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June 24, 2025
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Interpretation of differences between pseudotime and velocity stream
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0
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91
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March 17, 2025
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Num samples in export posterior for Visium HD
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0
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187
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October 3, 2024
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Handling Non-Matching Categorical Labels in scArches
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0
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76
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September 13, 2024
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Trajectory analysis of combined single-cell and single-nuclei data
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1
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580
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September 2, 2024
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Comparing cell type abundance acroos samples calculated in differnt runs
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0
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313
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December 7, 2023
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Save and read a GPCCA kernel object
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1
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413
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October 31, 2023
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Error running veloVI when trying to add veloVI outputs to adata
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1
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835
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September 25, 2023
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Spatialdata status
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2
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415
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May 16, 2023
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Plotting spatialdata in only one coordinate system
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2
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423
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May 15, 2023
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Scanorama embeddings on CellRank analysis
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0
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406
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May 11, 2023
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Error when running compute_transition_matrix()
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0
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265
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May 5, 2023
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Possible to distinguish directionality per condition in cytotrace?
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2
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453
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May 2, 2023
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Selecting Optimal Training Epochs for Cell2location
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0
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545
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April 16, 2023
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Further explanation of q05_cell_abundance_w_sf values
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1
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1124
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March 17, 2023
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Question about adjacent normal liver
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1
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464
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February 27, 2023
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Questions about Cell2location mathematics model
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2
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582
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February 27, 2023
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Get more from differential kinetic testing In scvelo
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0
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369
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February 7, 2023
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Extract high likelihood genes identified in latent time
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0
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526
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December 6, 2022
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Questions about Cell2location
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0
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740
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November 17, 2022
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Adding "equipment" to AnnData objects for neat addition of functionality
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3
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548
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November 1, 2022
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