Hello,
I am running though the tutorial in the SCANVI docs for Atlas level Lung Data. I’ve create the environment using conda/mamba and I am running this on MacOS Ventura 13.4.
I downloaded the example dataset and have been running the tutorial ‘as-is’, but I am running into an error in scvi.model.SCVI.setup_anndata(adata, layer="counts", batch_key="batch") where I get an IndexError: index (15132) out of range message.
Any help in resolving this error would be greatly appreciated!
Thanks,
Jenny
Full traceback:
IndexError Traceback (most recent call last)
/Users/jsmi26/local_repos/mack_d_2023.04.13_ipsc_neuromuscular_scrnaseq/references/scanvi/harmonization.ipynb Cell 15 line 2
1 print(adata)
----> 2 scvi.model.SCVI.setup_anndata(adata, layer="counts", batch_key="batch")
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/site-packages/scvi/model/_scvi.py:211, in SCVI.setup_anndata(cls, adata, layer, batch_key, labels_key, size_factor_key, categorical_covariate_keys, continuous_covariate_keys, **kwargs)
207 anndata_fields += cls._get_fields_for_adata_minification(adata_minify_type)
208 adata_manager = AnnDataManager(
209 fields=anndata_fields, setup_method_args=setup_method_args
210 )
--> 211 adata_manager.register_fields(adata, **kwargs)
212 cls.register_manager(adata_manager)
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/site-packages/scvi/data/_manager.py:181, in AnnDataManager.register_fields(self, adata, source_registry, **transfer_kwargs)
178 self._validate_anndata_object(adata)
180 for field in self.fields:
--> 181 self._add_field(
182 field=field,
183 adata=adata,
184 source_registry=source_registry,
185 **transfer_kwargs,
186 )
188 # Save arguments for register_fields.
189 self._source_registry = deepcopy(source_registry)
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/site-packages/scvi/data/_manager.py:224, in AnnDataManager._add_field(self, field, adata, source_registry, **transfer_kwargs)
216 field_registry[_constants._STATE_REGISTRY_KEY] = field.transfer_field(
217 source_registry[_constants._FIELD_REGISTRIES_KEY][
218 field.registry_key
(...)
221 **transfer_kwargs,
222 )
223 else:
--> 224 field_registry[_constants._STATE_REGISTRY_KEY] = field.register_field(
225 adata
226 )
227 # Compute and set summary stats for the given field.
228 state_registry = field_registry[_constants._STATE_REGISTRY_KEY]
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/site-packages/scvi/data/fields/_dataframe_field.py:189, in CategoricalDataFrameField.register_field(self, adata)
186 self._setup_default_attr(adata)
188 super().register_field(adata)
--> 189 categorical_mapping = _make_column_categorical(
190 getattr(adata, self.attr_name),
191 self._original_attr_key,
192 self.attr_key,
193 )
194 return {
195 self.CATEGORICAL_MAPPING_KEY: categorical_mapping,
196 self.ORIGINAL_ATTR_KEY: self._original_attr_key,
197 }
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/site-packages/scvi/data/_utils.py:177, in _make_column_categorical(df, column_key, alternate_column_key, categorical_dtype)
172 received_categories = df[column_key].astype("category").cat.categories
173 raise ValueError(
174 'Making .obs["{}"] categorical failed. Expected categories: {}. '
175 "Received categories: {}. ".format(column_key, mapping, received_categories)
176 )
--> 177 df[alternate_column_key] = codes
179 # make sure each category contains enough cells
180 if np.min(counts) < 3:
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/site-packages/anndata/_core/views.py:78, in _SetItemMixin.__setitem__(self, idx, value)
71 else:
72 warnings.warn(
73 f"Trying to modify attribute `.{self._view_args.attrname}` of view, "
74 "initializing view as actual.",
75 ImplicitModificationWarning,
76 stacklevel=2,
77 )
---> 78 with view_update(*self._view_args) as container:
79 container[idx] = value
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/contextlib.py:135, in _GeneratorContextManager.__enter__(self)
133 del self.args, self.kwds, self.func
134 try:
--> 135 return next(self.gen)
136 except StopIteration:
137 raise RuntimeError("generator didn't yield") from None
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/site-packages/anndata/_core/views.py:52, in view_update(adata_view, attr_name, keys)
32 @contextmanager
33 def view_update(adata_view: AnnData, attr_name: str, keys: tuple[str, ...]):
34 """Context manager for updating a view of an AnnData object.
35
36 Contains logic for "actualizing" a view. Yields the object to be modified in-place.
(...)
50 `adata.attr[key1][key2][keyn]...`
51 """
---> 52 new = adata_view.copy()
53 attr = getattr(new, attr_name)
54 container = reduce(lambda d, k: d[k], keys, attr)
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/site-packages/anndata/_core/anndata.py:1583, in AnnData.copy(self, filename)
1576 if not self.isbacked:
1577 if self.is_view and self._has_X():
1578 # TODO: How do I unambiguously check if this is a copy?
1579 # Subsetting this way means we don’t have to have a view type
1580 # defined for the matrix, which is needed for some of the
1581 # current distributed backend. Specifically Dask.
1582 return self._mutated_copy(
-> 1583 X=_subset(self._adata_ref.X, (self._oidx, self._vidx)).copy()
1584 )
1585 else:
1586 return self._mutated_copy()
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/functools.py:878, in singledispatch.<locals>.wrapper(*args, **kw)
874 if not args:
875 raise TypeError(f'{funcname} requires at least '
876 '1 positional argument')
--> 878 return dispatch(args[0].__class__)(*args, **kw)
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/site-packages/anndata/_core/index.py:166, in _subset_spmatrix(a, subset_idx)
164 if len(subset_idx) > 1 and all(isinstance(x, cabc.Iterable) for x in subset_idx):
165 subset_idx = (subset_idx[0].reshape(-1, 1), *subset_idx[1:])
--> 166 return a[subset_idx]
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/site-packages/scipy/sparse/_index.py:44, in IndexMixin.__getitem__(self, key)
43 def __getitem__(self, key):
---> 44 row, col = self._validate_indices(key)
46 # Dispatch to specialized methods.
47 if isinstance(row, INT_TYPES):
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/site-packages/scipy/sparse/_index.py:165, in IndexMixin._validate_indices(self, key)
163 col += N
164 elif not isinstance(col, slice):
--> 165 col = self._asindices(col, N)
167 return row, col
File ~/opt/mambaforge/envs/scanvi/lib/python3.10/site-packages/scipy/sparse/_index.py:188, in IndexMixin._asindices(self, idx, length)
186 max_indx = x.max()
187 if max_indx >= length:
--> 188 raise IndexError('index (%d) out of range' % max_indx)
190 min_indx = x.min()
191 if min_indx < 0:
IndexError: index (15132) out of range
The conda environment:
# packages in environment at /Users/jsmi26/opt/mambaforge/envs/scanvi:
#
# Name Version Build Channel
absl-py 2.0.0 pyhd8ed1ab_0 conda-forge
anndata 0.10.2 pyhd8ed1ab_0 conda-forge
annotated-types 0.6.0 pyhd8ed1ab_0 conda-forge
anyio 3.7.1 pyhd8ed1ab_0 conda-forge
appnope 0.1.3 pyhd8ed1ab_0 conda-forge
array-api-compat 1.4 pyhd8ed1ab_0 conda-forge
arrow 1.3.0 pyhd8ed1ab_0 conda-forge
asttokens 2.4.1 pyhd8ed1ab_0 conda-forge
attrs 23.1.0 pyh71513ae_1 conda-forge
backoff 2.2.1 pyhd8ed1ab_0 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.5 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.12.2 pyha770c72_0 conda-forge
blessed 1.19.1 pyhe4f9e05_2 conda-forge
brotli 1.1.0 hb547adb_1 conda-forge
brotli-bin 1.1.0 hb547adb_1 conda-forge
brotli-python 1.1.0 py310h1253130_1 conda-forge
bzip2 1.0.8 h3422bc3_4 conda-forge
c-ares 1.20.1 h93a5062_1 conda-forge
ca-certificates 2023.7.22 hf0a4a13_0 conda-forge
cachecontrol 0.13.1 pyhd8ed1ab_0 conda-forge
cachecontrol-with-filecache 0.13.1 pyhd8ed1ab_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
certifi 2023.7.22 pyhd8ed1ab_0 conda-forge
cffi 1.16.0 py310hdcd7c05_0 conda-forge
charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge
chex 0.1.83 pyhd8ed1ab_0 conda-forge
cleo 2.1.0 pyhd8ed1ab_0 conda-forge
click 8.1.7 unix_pyh707e725_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
comm 0.1.4 pyhd8ed1ab_0 conda-forge
contextlib2 21.6.0 pyhd8ed1ab_0 conda-forge
contourpy 1.1.1 py310h38f39d4_1 conda-forge
crashtest 0.4.1 pyhd8ed1ab_0 conda-forge
croniter 1.4.1 pyhd8ed1ab_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_0 conda-forge
dateutils 0.6.12 py_0 conda-forge
debugpy 1.8.0 py310h1253130_1 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
deepdiff 6.6.1 pyhd8ed1ab_0 conda-forge
distlib 0.3.7 pyhd8ed1ab_0 conda-forge
dm-tree 0.1.8 py310hf4e154e_0 conda-forge
docrep 0.3.2 pyh44b312d_0 conda-forge
dulwich 0.21.6 py310hd125d64_2 conda-forge
et_xmlfile 1.1.0 pyhd8ed1ab_0 conda-forge
exceptiongroup 1.1.3 pyhd8ed1ab_0 conda-forge
executing 2.0.1 pyhd8ed1ab_0 conda-forge
fastapi 0.104.1 pyhd8ed1ab_0 conda-forge
filelock 3.13.1 pyhd8ed1ab_0 conda-forge
flax 0.6.1 pyhd8ed1ab_1 conda-forge
fonttools 4.43.1 py310hd125d64_0 conda-forge
freetype 2.12.1 hadb7bae_2 conda-forge
fsspec 2023.10.0 pyhca7485f_0 conda-forge
gmp 6.2.1 h9f76cd9_0 conda-forge
gmpy2 2.1.2 py310h2e6cad2_1 conda-forge
h11 0.14.0 pyhd8ed1ab_0 conda-forge
h5py 3.10.0 nompi_py310h428b110_100 conda-forge
hdf5 1.14.2 nompi_h3aba7b3_100 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
importlib-metadata 6.8.0 pyha770c72_0 conda-forge
importlib_metadata 6.8.0 hd8ed1ab_0 conda-forge
importlib_resources 6.1.0 pyhd8ed1ab_0 conda-forge
inquirer 3.1.3 pyhd8ed1ab_0 conda-forge
ipykernel 6.26.0 pyh3cd1d5f_0 conda-forge
ipython 8.17.2 pyh31c8845_0 conda-forge
itsdangerous 2.1.2 pyhd8ed1ab_0 conda-forge
jaraco.classes 3.3.0 pyhd8ed1ab_0 conda-forge
jax 0.4.13 pyhd8ed1ab_0 conda-forge
jaxlib 0.4.12 cpu_py310h07108a6_1 conda-forge
jedi 0.19.1 pyhd8ed1ab_0 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
joblib 1.3.2 pyhd8ed1ab_0 conda-forge
jsonschema 4.17.3 pyhd8ed1ab_0 conda-forge
jupyter_client 8.5.0 pyhd8ed1ab_0 conda-forge
jupyter_core 5.5.0 py310hbe9552e_0 conda-forge
keyring 24.2.0 py310hbe9552e_1 conda-forge
kiwisolver 1.4.5 py310h38f39d4_1 conda-forge
krb5 1.21.2 h92f50d5_0 conda-forge
lcms2 2.15 hf2736f0_3 conda-forge
lerc 4.0.0 h9a09cb3_0 conda-forge
libabseil 20230125.3 cxx17_h13dd4ca_0 conda-forge
libaec 1.1.2 h13dd4ca_1 conda-forge
libblas 3.9.0 19_osxarm64_openblas conda-forge
libbrotlicommon 1.1.0 hb547adb_1 conda-forge
libbrotlidec 1.1.0 hb547adb_1 conda-forge
libbrotlienc 1.1.0 hb547adb_1 conda-forge
libcblas 3.9.0 19_osxarm64_openblas conda-forge
libcurl 8.4.0 h2d989ff_0 conda-forge
libcxx 16.0.6 h4653b0c_0 conda-forge
libdeflate 1.19 hb547adb_0 conda-forge
libedit 3.1.20191231 hc8eb9b7_2 conda-forge
libev 4.33 h642e427_1 conda-forge
libffi 3.4.2 h3422bc3_5 conda-forge
libgfortran 5.0.0 13_2_0_hd922786_1 conda-forge
libgfortran5 13.2.0 hf226fd6_1 conda-forge
libgrpc 1.56.2 h9075ed4_1 conda-forge
libjpeg-turbo 3.0.0 hb547adb_1 conda-forge
liblapack 3.9.0 19_osxarm64_openblas conda-forge
libllvm14 14.0.6 hd1a9a77_4 conda-forge
libnghttp2 1.55.1 h2b02ca0_0 conda-forge
libopenblas 0.3.24 openmp_hd76b1f2_0 conda-forge
libpng 1.6.39 h76d750c_0 conda-forge
libprotobuf 4.23.3 hf32f9b9_1 conda-forge
libsodium 1.0.18 h27ca646_1 conda-forge
libsqlite 3.44.0 h091b4b1_0 conda-forge
libssh2 1.11.0 h7a5bd25_0 conda-forge
libtiff 4.6.0 ha8a6c65_2 conda-forge
libuv 1.46.0 hb547adb_0 conda-forge
libwebp-base 1.3.2 hb547adb_0 conda-forge
libxcb 1.15 hf346824_0 conda-forge
libzlib 1.2.13 h53f4e23_5 conda-forge
lightning 2.0.9.post0 pyhd8ed1ab_0 conda-forge
lightning-cloud 0.5.39 pyhd8ed1ab_0 conda-forge
lightning-utilities 0.9.0 pyhd8ed1ab_0 conda-forge
llvm-openmp 17.0.4 hcd81f8e_0 conda-forge
llvmlite 0.40.1 py310h95b248a_0 conda-forge
markdown-it-py 3.0.0 pyhd8ed1ab_0 conda-forge
markupsafe 2.1.3 py310h2aa6e3c_1 conda-forge
matplotlib-base 3.8.0 py310h9d2df84_2 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
mdurl 0.1.0 pyhd8ed1ab_0 conda-forge
ml-collections 0.1.1 pyhd8ed1ab_0 conda-forge
ml_dtypes 0.3.1 py310h6e3cc31_2 conda-forge
more-itertools 10.1.0 pyhd8ed1ab_0 conda-forge
mpc 1.3.1 h91ba8db_0 conda-forge
mpfr 4.2.1 h9546428_0 conda-forge
mpmath 1.3.0 pyhd8ed1ab_0 conda-forge
msgpack-python 1.0.6 py310h38f39d4_0 conda-forge
mudata 0.2.3 pyhd8ed1ab_0 conda-forge
multipledispatch 0.6.0 py_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
natsort 8.4.0 pyhd8ed1ab_0 conda-forge
ncurses 6.4 h463b476_2 conda-forge
nest-asyncio 1.5.8 pyhd8ed1ab_0 conda-forge
networkx 3.2.1 pyhd8ed1ab_0 conda-forge
nomkl 1.0 h5ca1d4c_0 conda-forge
numba 0.57.1 py310hb9b3264_0 conda-forge
numpy 1.24.4 py310haa1e00c_0 conda-forge
numpyro 0.13.2 pyhd8ed1ab_0 conda-forge
openjpeg 2.5.0 h4c1507b_3 conda-forge
openpyxl 3.1.2 py310h2aa6e3c_1 conda-forge
openssl 3.1.4 h0d3ecfb_0 conda-forge
opt_einsum 3.3.0 pyhc1e730c_2 conda-forge
optax 0.1.7 pyhd8ed1ab_0 conda-forge
ordered-set 4.1.0 pyhd8ed1ab_0 conda-forge
orjson 3.9.10 py310h76820b8_0 conda-forge
packaging 23.2 pyhd8ed1ab_0 conda-forge
pandas 2.1.2 py310h6e3cc31_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
patsy 0.5.3 pyhd8ed1ab_0 conda-forge
pexpect 4.8.0 pyh1a96a4e_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 10.1.0 py310hfae7ebd_0 conda-forge
pip 23.3.1 pyhd8ed1ab_0 conda-forge
pkginfo 1.9.6 pyhd8ed1ab_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_1 conda-forge
platformdirs 3.11.0 pyhd8ed1ab_0 conda-forge
poetry 1.6.1 osx_pyh534df25_0 conda-forge
poetry-core 1.7.0 pyhd8ed1ab_0 conda-forge
poetry-plugin-export 1.6.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.39 pyha770c72_0 conda-forge
prompt_toolkit 3.0.39 hd8ed1ab_0 conda-forge
psutil 5.9.5 py310h2aa6e3c_1 conda-forge
pthread-stubs 0.4 h27ca646_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydantic 2.1.1 pyhd8ed1ab_0 conda-forge
pydantic-core 2.4.0 py310had9acf8_0 conda-forge
pygments 2.16.1 pyhd8ed1ab_0 conda-forge
pyjwt 2.8.0 pyhd8ed1ab_0 conda-forge
pynndescent 0.5.10 pyh1a96a4e_0 conda-forge
pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge
pyproject_hooks 1.0.0 pyhd8ed1ab_0 conda-forge
pyro-api 0.1.2 pyhd8ed1ab_0 conda-forge
pyro-ppl 1.8.6 pyhd8ed1ab_0 conda-forge
pyrsistent 0.20.0 py310hd125d64_0 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
python 3.10.0 h43b31ca_3_cpython conda-forge
python-build 0.10.0 pyhd8ed1ab_1 conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-editor 1.0.4 py_0 conda-forge
python-installer 0.7.0 pyhd8ed1ab_0 conda-forge
python-multipart 0.0.6 pyhd8ed1ab_0 conda-forge
python-tzdata 2023.3 pyhd8ed1ab_0 conda-forge
python_abi 3.10 4_cp310 conda-forge
pytorch 2.0.0 cpu_generic_py310h11b5426_1 conda-forge
pytorch-lightning 2.1.0 pyhd8ed1ab_0 conda-forge
pytz 2023.3.post1 pyhd8ed1ab_0 conda-forge
pyyaml 6.0.1 py310h2aa6e3c_1 conda-forge
pyzmq 25.1.1 py310h7e65269_2 conda-forge
rapidfuzz 3.4.0 py310hd5a4765_0 conda-forge
re2 2023.03.02 hc5e2d97_0 conda-forge
readchar 4.0.5 pyhd8ed1ab_0 conda-forge
readline 8.2 h92ec313_1 conda-forge
requests 2.31.0 pyhd8ed1ab_0 conda-forge
requests-toolbelt 1.0.0 pyhd8ed1ab_0 conda-forge
rich 13.6.0 pyhd8ed1ab_0 conda-forge
scanpy 1.9.5 pyhd8ed1ab_0 conda-forge
scikit-learn 1.3.2 py310h417b086_1 conda-forge
scikit-misc 0.3.0 pypi_0 pypi
scipy 1.11.3 py310hd1cfc7d_1 conda-forge
scvi-tools 1.0.4 pyhd8ed1ab_0 conda-forge
seaborn 0.13.0 hd8ed1ab_0 conda-forge
seaborn-base 0.13.0 pyhd8ed1ab_0 conda-forge
session-info 1.0.0 pyhd8ed1ab_0 conda-forge
setuptools 68.2.2 pyhd8ed1ab_0 conda-forge
shellingham 1.5.4 pyhd8ed1ab_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sleef 3.5.1 h156473d_2 conda-forge
sniffio 1.3.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.5 pyhd8ed1ab_1 conda-forge
sparse 0.14.0 pyhd8ed1ab_0 conda-forge
sqlite 3.44.0 hf2abe2d_0 conda-forge
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
starlette 0.27.0 pyhd8ed1ab_0 conda-forge
starsessions 1.3.0 pyhd8ed1ab_0 conda-forge
statsmodels 0.14.0 py310h50ce23c_2 conda-forge
stdlib-list 0.8.0 pyhd8ed1ab_0 conda-forge
sympy 1.12 pypyh9d50eac_103 conda-forge
tbb 2021.10.0 h1995070_2 conda-forge
threadpoolctl 3.2.0 pyha21a80b_0 conda-forge
tk 8.6.13 hb31c410_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tomlkit 0.12.1 pyha770c72_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
torchmetrics 1.2.0 pyhd8ed1ab_0 conda-forge
tornado 6.3.3 py310h2aa6e3c_1 conda-forge
tqdm 4.66.1 pyhd8ed1ab_0 conda-forge
traitlets 5.13.0 pyhd8ed1ab_0 conda-forge
trove-classifiers 2023.10.18 pyhd8ed1ab_0 conda-forge
types-python-dateutil 2.8.19.14 pyhd8ed1ab_0 conda-forge
typing-extensions 4.8.0 hd8ed1ab_0 conda-forge
typing_extensions 4.8.0 pyha770c72_0 conda-forge
tzdata 2023c h71feb2d_0 conda-forge
umap-learn 0.5.4 py310hbe9552e_0 conda-forge
unicodedata2 15.1.0 py310h2aa6e3c_0 conda-forge
urllib3 2.0.7 pyhd8ed1ab_0 conda-forge
uvicorn 0.23.2 py310hbe9552e_1 conda-forge
virtualenv 20.24.6 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.9 pyhd8ed1ab_0 conda-forge
websocket-client 1.6.4 pyhd8ed1ab_0 conda-forge
websockets 12.0 py310hd125d64_0 conda-forge
wheel 0.41.3 pyhd8ed1ab_0 conda-forge
xarray 2023.10.1 pyhd8ed1ab_0 conda-forge
xattr 0.10.1 py310h2aa6e3c_1 conda-forge
xlrd 1.2.0 pyh9f0ad1d_1 conda-forge
xorg-libxau 1.0.11 hb547adb_0 conda-forge
xorg-libxdmcp 1.1.3 h27ca646_0 conda-forge
xz 5.2.6 h57fd34a_0 conda-forge
yaml 0.2.5 h3422bc3_2 conda-forge
zeromq 4.3.5 h965bd2d_0 conda-forge
zipp 3.17.0 pyhd8ed1ab_0 conda-forge
zstd 1.5.5 h4f39d0f_0 conda-forge