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About the scRNA-seq category
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0
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378
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March 4, 2022
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How to load GEO datasets for analysis using Scanpy / Scvi tools?
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6
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1669
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November 6, 2024
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Gene Regulatory Network in scverse
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2
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936
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October 20, 2024
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ST: clustering on each tissue section or clustering on all combined in anndata object?
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0
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14
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August 19, 2024
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Questions about how to do DE with one replicate for one sample
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0
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59
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July 31, 2024
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Questions about scib weight choice
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0
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184
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December 5, 2023
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Scib-metrics error with "ValueError: Each cell must have the same number of neighbors."
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0
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289
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November 5, 2023
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Not sure if scvi is using my GPU or not
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7
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1051
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June 13, 2023
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Clustering with scVI latent space
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1
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417
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May 26, 2023
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Pseudobulk DE gene Analysis in scverse ecosystem
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10
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1589
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March 30, 2023
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MultiQC module to parse scanpy/anndata results
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1
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398
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December 1, 2022
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Pathway Analysis
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16
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1739
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November 16, 2022
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Comparing Clusters of Different Anndata through the use of Dendrogram
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2
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865
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November 2, 2022
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DE analysis stochasticity
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6
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463
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October 15, 2022
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Understanding gimVI loss logits
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0
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302
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October 6, 2022
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Best practices for processing/analyzing large scale scrna-seq datasets across multiple days
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2
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600
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September 15, 2022
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Subset/subcluster and reprocess
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0
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934
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August 3, 2022
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Scanpy Ingest Understanding
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0
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766
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July 8, 2022
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HVG selection with multiple batches
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3
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853
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July 4, 2022
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UMI tables using scanpy
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3
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613
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June 29, 2022
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Batch correction with covariate preservation
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2
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675
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June 13, 2022
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Plot subsamples in the Anndata
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0
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300
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June 2, 2022
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plot different sample regions and different age groups from AnnDat
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0
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340
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May 24, 2022
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Adding trend line to scatter plot?
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1
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882
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May 7, 2022
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Reading in a 1.1 million cell HDF5 dataset
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4
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981
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March 26, 2022
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Summarizing a multipatient experimental design
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0
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454
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September 8, 2021
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Gene filtering prior to batch correction
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2
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680
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July 9, 2021
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Minimum Cluster Size?
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2
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479
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July 8, 2021
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