|
About the scRNA-seq category
|
|
0
|
404
|
March 4, 2022
|
|
[Tool] scVAE-Annotator: Automated Cell Type Annotation for scRNA-seq with VAE and Adaptive Marker Discovery
|
|
7
|
230
|
February 4, 2026
|
|
Harmony-R vs Harmony-Py
|
|
0
|
230
|
July 31, 2025
|
|
Tutorial Scanpy X ReadStore Integration for NGS Project Management
|
|
0
|
47
|
February 25, 2025
|
|
How to load GEO datasets for analysis using Scanpy / Scvi tools?
|
|
6
|
2432
|
November 6, 2024
|
|
Gene Regulatory Network in scverse
|
|
2
|
1419
|
October 20, 2024
|
|
ST: clustering on each tissue section or clustering on all combined in anndata object?
|
|
0
|
68
|
August 19, 2024
|
|
Questions about how to do DE with one replicate for one sample
|
|
0
|
355
|
July 31, 2024
|
|
Questions about scib weight choice
|
|
0
|
246
|
December 5, 2023
|
|
Scib-metrics error with "ValueError: Each cell must have the same number of neighbors."
|
|
0
|
363
|
November 5, 2023
|
|
Not sure if scvi is using my GPU or not
|
|
7
|
1440
|
June 13, 2023
|
|
Clustering with scVI latent space
|
|
1
|
598
|
May 26, 2023
|
|
Pseudobulk DE gene Analysis in scverse ecosystem
|
|
10
|
3529
|
March 30, 2023
|
|
MultiQC module to parse scanpy/anndata results
|
|
1
|
468
|
December 1, 2022
|
|
Pathway Analysis
|
|
16
|
2903
|
November 16, 2022
|
|
Comparing Clusters of Different Anndata through the use of Dendrogram
|
|
2
|
1069
|
November 2, 2022
|
|
DE analysis stochasticity
|
|
6
|
626
|
October 15, 2022
|
|
Understanding gimVI loss logits
|
|
0
|
341
|
October 6, 2022
|
|
Best practices for processing/analyzing large scale scrna-seq datasets across multiple days
|
|
2
|
1031
|
September 15, 2022
|
|
Subset/subcluster and reprocess
|
|
0
|
1157
|
August 3, 2022
|
|
Scanpy Ingest Understanding
|
|
0
|
850
|
July 8, 2022
|
|
HVG selection with multiple batches
|
|
3
|
1265
|
July 4, 2022
|
|
UMI tables using scanpy
|
|
3
|
781
|
June 29, 2022
|
|
Batch correction with covariate preservation
|
|
2
|
854
|
June 13, 2022
|
|
Plot subsamples in the Anndata
|
|
0
|
351
|
June 2, 2022
|
|
plot different sample regions and different age groups from AnnDat
|
|
0
|
402
|
May 24, 2022
|
|
Adding trend line to scatter plot?
|
|
1
|
1018
|
May 7, 2022
|
|
Reading in a 1.1 million cell HDF5 dataset
|
|
4
|
1333
|
March 26, 2022
|
|
Summarizing a multipatient experimental design
|
|
0
|
530
|
September 8, 2021
|
|
Gene filtering prior to batch correction
|
|
2
|
905
|
July 9, 2021
|