|
About the scRNA-seq category
|
|
0
|
319
|
March 4, 2022
|
|
Questions about scib weight choice
|
|
0
|
103
|
December 5, 2023
|
|
Scib-metrics error with "ValueError: Each cell must have the same number of neighbors."
|
|
0
|
187
|
November 5, 2023
|
|
Not sure if scvi is using my GPU or not
|
|
7
|
728
|
June 13, 2023
|
|
Clustering with scVI latent space
|
|
1
|
316
|
May 26, 2023
|
|
Pseudobulk DE gene Analysis in scverse ecosystem
|
|
10
|
867
|
March 30, 2023
|
|
MultiQC module to parse scanpy/anndata results
|
|
1
|
347
|
December 1, 2022
|
|
Gene Regulatory Network in scverse
|
|
1
|
708
|
November 23, 2022
|
|
Pathway Analysis
|
|
16
|
1202
|
November 16, 2022
|
|
How to load GEO datasets for analysis using Scanpy / Scvi tools?
|
|
4
|
1258
|
November 9, 2022
|
|
Comparing Clusters of Different Anndata through the use of Dendrogram
|
|
2
|
658
|
November 2, 2022
|
|
DE analysis stochasticity
|
|
6
|
420
|
October 15, 2022
|
|
Understanding gimVI loss logits
|
|
0
|
260
|
October 6, 2022
|
|
Best practices for processing/analyzing large scale scrna-seq datasets across multiple days
|
|
2
|
501
|
September 15, 2022
|
|
Subset/subcluster and reprocess
|
|
0
|
700
|
August 3, 2022
|
|
Scanpy Ingest Understanding
|
|
0
|
623
|
July 8, 2022
|
|
HVG selection with multiple batches
|
|
3
|
707
|
July 4, 2022
|
|
UMI tables using scanpy
|
|
3
|
505
|
June 29, 2022
|
|
Batch correction with covariate preservation
|
|
2
|
524
|
June 13, 2022
|
|
Plot subsamples in the Anndata
|
|
0
|
262
|
June 2, 2022
|
|
plot different sample regions and different age groups from AnnDat
|
|
0
|
301
|
May 24, 2022
|
|
Adding trend line to scatter plot?
|
|
1
|
729
|
May 7, 2022
|
|
Reading in a 1.1 million cell HDF5 dataset
|
|
4
|
780
|
March 26, 2022
|
|
Summarizing a multipatient experimental design
|
|
0
|
407
|
September 8, 2021
|
|
Gene filtering prior to batch correction
|
|
2
|
562
|
July 9, 2021
|
|
Minimum Cluster Size?
|
|
2
|
433
|
July 8, 2021
|