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About the spatialdata category
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0
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277
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May 16, 2023
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Spatialdata.aggregate, image and segmentation_mask have different shape, but aligned in 'global'
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1
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33
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May 26, 2025
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How to plot annotation in Xenium data using spatialdata
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8
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95
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April 10, 2025
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How to filter out specific cell types in spatialdata similar to anndata?
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0
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44
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March 27, 2025
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Really hard to plot categories palette
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1
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42
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February 14, 2025
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Dealing with multiple samples
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9
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679
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February 13, 2025
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Cropping spatialdata to extent of shapes
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2
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60
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January 20, 2025
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Napari_spatialdata colouring cell_labels and plotting specific transcripts
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3
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210
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December 28, 2024
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`crop0(sdata).pl.render_labels` running too slow
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1
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38
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November 27, 2024
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Xenium z-coord normalization
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1
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79
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November 19, 2024
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How to extract transformed polygons from sdata.shapes?
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3
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57
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September 2, 2024
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Read failure with aligned example data; fails on "shapes"
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2
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33
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August 7, 2024
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[moved] How to align image to cropped data, visualize with Xenium Explorer
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1
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156
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July 2, 2024
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Spatial resolution artifacts outside of detected tissue
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8
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121
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June 24, 2024
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Spatialdata wrong shapes translation
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8
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115
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June 21, 2024
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Add & plot cell type annotation to spatialdata
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3
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274
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May 29, 2024
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Remove coordinate system from Spatialdata
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1
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160
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April 9, 2024
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View xenium images in napari
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5
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351
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February 25, 2024
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Using my own datasets with spatialData
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9
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417
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February 8, 2024
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Importing cellcharter
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1
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146
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January 22, 2024
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Create SpatialData from Akoya Phenocycler qptiff
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5
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587
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December 5, 2023
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Save layer back to spatialdata from napari
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6
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341
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November 15, 2023
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Deconvolute spatial (Visium) using a bulk RNA-seq dataset
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1
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296
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September 26, 2023
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How to implement MonkeyBread pipeline for Visium spatial data
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4
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301
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August 22, 2023
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Need help with the napari.spatialdata Interactive() function
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3
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307
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August 7, 2023
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Unexpected Coordinate Values with Image2DModel
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5
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268
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July 15, 2023
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Composing transformations
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1
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230
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June 22, 2023
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Can I aggregate images and data by shapes?
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3
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295
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June 22, 2023
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MERFISH data analysis from scratch
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2
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700
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June 4, 2023
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