|
About the spatialdata category
|
|
0
|
286
|
May 16, 2023
|
|
Questions on Shapes + Tables vs single AnnData object
|
|
6
|
70
|
December 11, 2025
|
|
Spatialdata.aggregate, image and segmentation_mask have different shape, but aligned in 'global'
|
|
4
|
119
|
November 21, 2025
|
|
Calculate gene signature scores from cell2location-deconvolved spatial transcriptomics
|
|
0
|
29
|
October 22, 2025
|
|
SpatialData workflow
|
|
3
|
118
|
August 12, 2025
|
|
How to filter out specific cell types in spatialdata similar to anndata?
|
|
1
|
118
|
August 1, 2025
|
|
RESOLVI - continuous_covariate_keys
|
|
0
|
74
|
July 24, 2025
|
|
How to plot annotation in Xenium data using spatialdata
|
|
8
|
189
|
April 10, 2025
|
|
Really hard to plot categories palette
|
|
1
|
105
|
February 14, 2025
|
|
Dealing with multiple samples
|
|
9
|
1084
|
February 13, 2025
|
|
Cropping spatialdata to extent of shapes
|
|
2
|
126
|
January 20, 2025
|
|
Napari_spatialdata colouring cell_labels and plotting specific transcripts
|
|
3
|
297
|
December 28, 2024
|
|
`crop0(sdata).pl.render_labels` running too slow
|
|
1
|
77
|
November 27, 2024
|
|
Xenium z-coord normalization
|
|
1
|
137
|
November 19, 2024
|
|
How to extract transformed polygons from sdata.shapes?
|
|
3
|
130
|
September 2, 2024
|
|
Read failure with aligned example data; fails on "shapes"
|
|
2
|
70
|
August 7, 2024
|
|
[moved] How to align image to cropped data, visualize with Xenium Explorer
|
|
1
|
266
|
July 2, 2024
|
|
Spatial resolution artifacts outside of detected tissue
|
|
8
|
179
|
June 24, 2024
|
|
Spatialdata wrong shapes translation
|
|
8
|
165
|
June 21, 2024
|
|
Add & plot cell type annotation to spatialdata
|
|
3
|
427
|
May 29, 2024
|
|
Remove coordinate system from Spatialdata
|
|
1
|
192
|
April 9, 2024
|
|
View xenium images in napari
|
|
5
|
525
|
February 25, 2024
|
|
Using my own datasets with spatialData
|
|
9
|
537
|
February 8, 2024
|
|
Importing cellcharter
|
|
1
|
173
|
January 22, 2024
|
|
Create SpatialData from Akoya Phenocycler qptiff
|
|
5
|
743
|
December 5, 2023
|
|
Save layer back to spatialdata from napari
|
|
6
|
426
|
November 15, 2023
|
|
Deconvolute spatial (Visium) using a bulk RNA-seq dataset
|
|
1
|
360
|
September 26, 2023
|
|
How to implement MonkeyBread pipeline for Visium spatial data
|
|
4
|
340
|
August 22, 2023
|
|
Need help with the napari.spatialdata Interactive() function
|
|
3
|
347
|
August 7, 2023
|
|
Unexpected Coordinate Values with Image2DModel
|
|
5
|
313
|
July 15, 2023
|