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About the spatialdata category
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0
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285
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May 16, 2023
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Questions on Shapes + Tables vs single AnnData object
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6
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58
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December 11, 2025
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Spatialdata.aggregate, image and segmentation_mask have different shape, but aligned in 'global'
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4
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118
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November 21, 2025
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Calculate gene signature scores from cell2location-deconvolved spatial transcriptomics
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0
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22
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October 22, 2025
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SpatialData workflow
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3
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115
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August 12, 2025
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How to filter out specific cell types in spatialdata similar to anndata?
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1
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114
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August 1, 2025
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RESOLVI - continuous_covariate_keys
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0
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71
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July 24, 2025
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How to plot annotation in Xenium data using spatialdata
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8
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180
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April 10, 2025
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Really hard to plot categories palette
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1
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103
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February 14, 2025
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Dealing with multiple samples
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9
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1048
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February 13, 2025
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Cropping spatialdata to extent of shapes
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2
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125
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January 20, 2025
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Napari_spatialdata colouring cell_labels and plotting specific transcripts
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3
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288
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December 28, 2024
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`crop0(sdata).pl.render_labels` running too slow
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1
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73
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November 27, 2024
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Xenium z-coord normalization
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1
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129
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November 19, 2024
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How to extract transformed polygons from sdata.shapes?
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3
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123
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September 2, 2024
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Read failure with aligned example data; fails on "shapes"
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2
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68
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August 7, 2024
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[moved] How to align image to cropped data, visualize with Xenium Explorer
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1
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256
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July 2, 2024
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Spatial resolution artifacts outside of detected tissue
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8
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175
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June 24, 2024
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Spatialdata wrong shapes translation
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8
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159
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June 21, 2024
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Add & plot cell type annotation to spatialdata
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3
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415
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May 29, 2024
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Remove coordinate system from Spatialdata
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1
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190
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April 9, 2024
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View xenium images in napari
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5
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507
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February 25, 2024
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Using my own datasets with spatialData
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9
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532
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February 8, 2024
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Importing cellcharter
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1
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168
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January 22, 2024
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Create SpatialData from Akoya Phenocycler qptiff
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5
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728
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December 5, 2023
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Save layer back to spatialdata from napari
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6
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424
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November 15, 2023
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Deconvolute spatial (Visium) using a bulk RNA-seq dataset
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1
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355
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September 26, 2023
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How to implement MonkeyBread pipeline for Visium spatial data
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4
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337
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August 22, 2023
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Need help with the napari.spatialdata Interactive() function
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3
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345
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August 7, 2023
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Unexpected Coordinate Values with Image2DModel
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5
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308
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July 15, 2023
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