Hi,
I am trying to import cellcharter to perform clustering on MERSCOPE data and I run into errors during the import:
I am using spatialdata==0.0.12 and the below commands for other dependencies
conda create -n cellcharter-env -c conda-forge python=3.10 mamba
conda activate cellcharter-env
mamba install pytorch==1.13.1 torchvision==0.14.1 torchaudio==0.13.1 pytorch-cuda=11.7 -c pytorch -c nvidia
pip install cellcharter
pip install scvi-tools==1.0.3
Any help would be greatly appreciated. Thank you!