|
Issue with multiVI get_normalized_expression and get_normalized_accessibility
|
|
5
|
137
|
December 7, 2025
|
|
Question about complex experiment
|
|
1
|
101
|
November 25, 2025
|
|
MultiVI questions on Integrating Multiple Multiome Datasets
|
|
1
|
147
|
September 25, 2025
|
|
multiVI speed and cpu consumption
|
|
2
|
96
|
August 30, 2025
|
|
Does MultiVI support using tile matrix directly instead of peak calling for ATAC input?
|
|
2
|
118
|
July 9, 2025
|
|
Protocol for model optimization (currently focused on MultiVI)
|
|
3
|
684
|
May 14, 2025
|
|
[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC?
|
|
1
|
134
|
October 17, 2024
|
|
Scvi.data.organize_multiome_anndatas with two big anndata objects
|
|
1
|
224
|
May 3, 2024
|
|
Integration of Multiple Multiome Datasets
|
|
5
|
883
|
March 6, 2024
|
|
How to compute the integration metrics
|
|
1
|
272
|
February 16, 2024
|
|
MultiVI size factor for multiple modalities
|
|
0
|
270
|
November 24, 2023
|
|
Nonsense UMAP when including categorical covariates in a MULTIVI model
|
|
1
|
353
|
August 28, 2023
|
|
"ValueError: cannot specify integer `bins` when input data contains infinity" in multi sample data
|
|
6
|
5140
|
June 27, 2023
|
|
Dataset integration and analysis
|
|
3
|
984
|
May 3, 2023
|
|
totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data
|
|
3
|
903
|
March 9, 2023
|
|
3 sets of CITE-Seq data, how to concatenate or make single file for further analysis?
|
|
0
|
515
|
February 7, 2023
|
|
Anndata.concatenate() with two 10x multiome datasets?
|
|
2
|
724
|
December 29, 2022
|
|
How to dynamically mask categorical_covariate_keys during training?
|
|
3
|
416
|
October 19, 2022
|
|
Clarification on unpaired data smoothing during MultiVI `training_step()`?
|
|
0
|
307
|
October 7, 2022
|
|
multiVI and totalVI modal integration question
|
|
0
|
546
|
September 15, 2022
|
|
Advice regarding complex multimodal integration/analysis strategy
|
|
0
|
464
|
July 28, 2022
|
|
How to impute the modality (like ATAC) when I only have the other modality (RNA) using a pre-trained MultiVI?
|
|
5
|
431
|
July 1, 2022
|
|
Labels_key not available for scvi.model.MULTIVI.setup_anndata()
|
|
3
|
508
|
March 1, 2022
|
|
Reference mapping with MultiVI
|
|
0
|
435
|
January 25, 2022
|
|
Integrate multiple samples for paired multi-omics data
|
|
1
|
663
|
February 15, 2022
|
|
MULTIVI training fails before first epoch
|
|
1
|
550
|
December 16, 2021
|
|
MultiVi with multiple GPUs and CPUs
|
|
2
|
1166
|
December 2, 2021
|