|
How to use totalVI denoised protein measurements
|
|
1
|
71
|
November 9, 2025
|
|
Question about get_normalized_expression computation
|
|
3
|
129
|
November 5, 2025
|
|
Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression
|
|
2
|
110
|
July 10, 2025
|
|
Workflow advice for totalVI in CITE-seq Multiplexed data
|
|
3
|
171
|
June 19, 2025
|
|
Regressing out isotype controls
|
|
4
|
910
|
June 6, 2025
|
|
Help on MultiVI for data modality
|
|
1
|
261
|
May 16, 2025
|
|
TotalVI not fully integrating CITEseq cells with GEX and missing protein values
|
|
1
|
114
|
February 6, 2025
|
|
Impact of batch on TotalVI results
|
|
1
|
120
|
January 5, 2025
|
|
[suggestion] what would be the appropriate pipeline to perform joint embedding of GEX and ATAC?
|
|
1
|
129
|
October 17, 2024
|
|
N_samples ( refers to Monte Carlo sampling for each cell) setting in totalVI
|
|
1
|
110
|
June 28, 2024
|
|
Failing to import SCVI-tools modules: has AnnDatasetFromAnnData been replaced?
|
|
2
|
118
|
June 27, 2024
|
|
Integration of Multiple Multiome Datasets
|
|
5
|
861
|
March 6, 2024
|
|
Questions about scib weight choice
|
|
0
|
228
|
December 5, 2023
|
|
Vae_q.latent_space_classifer_ not found in totalVI CITE-seq reference mapping tutorial
|
|
3
|
261
|
November 20, 2023
|
|
Multi-omics scANVI
|
|
1
|
275
|
November 14, 2023
|
|
RuntimeWarning: The lr scheduler dict contains the key(s)
|
|
0
|
273
|
October 23, 2023
|
|
How to properly save and load a TotalVI trained model that's based on mudata?
|
|
1
|
927
|
September 7, 2023
|
|
TypeError when trying to set up scvi.model.TOTALVI()
|
|
2
|
424
|
August 29, 2023
|
|
Increase number of CPU cores for vae.train() in scvi?
|
|
3
|
1018
|
August 28, 2023
|
|
Debugging Issue for CITE-seq analysis with totalVI juytper notebook tutorial
|
|
6
|
374
|
June 21, 2023
|
|
Totalvi failing to write an h5mu objecy
|
|
7
|
350
|
May 10, 2023
|
|
Dataset integration and analysis
|
|
3
|
973
|
May 3, 2023
|
|
totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data
|
|
3
|
881
|
March 9, 2023
|
|
3 sets of CITE-Seq data, how to concatenate or make single file for further analysis?
|
|
0
|
507
|
February 7, 2023
|
|
multiVI and totalVI modal integration question
|
|
0
|
530
|
September 15, 2022
|
|
TotalVI log normalization and non-negativity
|
|
4
|
534
|
September 11, 2022
|
|
Error in scvi.model.TOTALVI.setup_anndata when loading protein-only data
|
|
5
|
796
|
August 25, 2022
|
|
Advice regarding complex multimodal integration/analysis strategy
|
|
0
|
458
|
July 28, 2022
|
|
The totalVI DE test; gene names
|
|
2
|
426
|
May 24, 2022
|
|
ScArches-TotalVI reproducibility
|
|
15
|
920
|
May 19, 2022
|