Convert anndata to seurat (spatial)

[npont]

Hi there,
I am struggling to convert my anndata object to Seurat properly.
I made a StarDist segmentation using scanpy, creating a anndata object (which is basically a segmented visium HD object) and I now want to use it on Seurat to perform downstream analysis.

Did anyone went through that yet?

Thanks a bunch!

[ttreis]

Hey npont,

I recommend to use SpatialData instead of AnnData for anything spatial. Then you can segment using Squidpy and SOPA and probably also perform a good chunk of your downstream analysis.