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TCR and BCR genes and HVGs selection
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5
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381
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April 3, 2024
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Differential expression genes: test to use?
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0
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404
|
April 2, 2024
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Leiden clustering gives me different results when I run it
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1
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618
|
April 1, 2024
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Does Scanpy stores raw count as int or float?
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1
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525
|
March 25, 2024
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Sc.pl.draw_graph
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1
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322
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March 19, 2024
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Normalized data found instead of raw counts
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2
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1140
|
March 18, 2024
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Sc.pl.draw_graph is strongly affected by the outliers
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0
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147
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March 18, 2024
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How to reuse cmap for other plots?
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3
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509
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March 9, 2024
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How to get dot values from `sc.pl.dotplot()`?
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1
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941
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March 1, 2024
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Remove genes from highly variable genes
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1
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903
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February 21, 2024
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Converting tab-delimited files to adata in a memory-efficient way
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3
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317
|
February 21, 2024
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ModuleNotFoundErrror: no module named "importlib.metadata"
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4
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2622
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February 15, 2024
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Error with cyclone ['DataFrame' object has no attribute 'iteritems' ]
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0
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264
|
February 12, 2024
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Plots shifted when using scanpy in R markdown
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0
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172
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February 1, 2024
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Trying to read custom genome using sc.read_10x_h5
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0
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415
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January 26, 2024
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Heatmap cannot be assigned as a subplot
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1
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497
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January 16, 2024
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Umap shapes different for the same dataset
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1
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413
|
January 15, 2024
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Mismatch between MAST DE results and dotplot
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0
|
205
|
January 9, 2024
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Pl.dotplot : legend(mean expression in group) number is so large
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1
|
413
|
January 9, 2024
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Option to plot separate umaps for concatenated datasets
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4
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1437
|
December 27, 2023
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Weird oval umap cluster
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0
|
307
|
December 25, 2023
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Differential gene expression - normalize gene values?
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0
|
277
|
December 6, 2023
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Error when saving adata with adata.write_h5ad(): "Above error raised while writing key 'names' of to /"
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2
|
2557
|
December 3, 2023
|
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UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored
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8
|
8121
|
December 1, 2023
|
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Methods of calculating graphs
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0
|
319
|
November 9, 2023
|
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Scanpy equivalent of Seurat's FindConservedMarkers
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0
|
378
|
November 8, 2023
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Correlation matrix values
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0
|
441
|
November 8, 2023
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Reading matrix.mtx with "real" number format
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0
|
427
|
October 29, 2023
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Contour Plot based on gene expression or score
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0
|
587
|
October 26, 2023
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How to show the cells on my umap projection based on barcodes
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2
|
651
|
October 12, 2023
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