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Error scanpy pbmc data
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4
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492
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July 25, 2023
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Best pre-processing steps for sc.tl.ingest()?
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0
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359
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July 20, 2023
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I am getting an error with sc.pp.neighbours()
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0
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450
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July 10, 2023
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Regressing out variables in pearson residual normalization
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2
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410
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July 7, 2023
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CITEsq loading in RNA and ADT data
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4
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541
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July 6, 2023
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Remove certain cells that look like doublets by gene expression levels
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0
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310
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July 4, 2023
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How I can use big data with scanpy?
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1
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248
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July 3, 2023
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Problem in PerformanceWarning
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1
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641
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June 30, 2023
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"ValueError: cannot specify integer `bins` when input data contains infinity" in multi sample data
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6
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2568
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June 27, 2023
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Scanpy matrixplot dendrogram by both axes
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0
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184
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June 23, 2023
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Reorder dendrogram/heatmap for pl.rank_genes_groups_heatmap
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0
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249
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June 22, 2023
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Obtain pixel grid from scanpy.pl.spatial
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0
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213
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June 21, 2023
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How to randomize plotting order of cells in sc.pl.umap
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0
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303
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June 17, 2023
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Show cluster numbers on scanpy UMAP plot like in Featureplot in Seurat
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5
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1561
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June 16, 2023
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How can I know the Harmony package version when using .external.pp.harmony_integrate?
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0
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156
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June 16, 2023
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Oddly high amount of clusters during subcluster analysis using Leiden
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0
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238
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June 12, 2023
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Using pearson residuals for differential gene analysis
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0
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305
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June 5, 2023
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How to match all sizes of spatial plots within a subplot
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0
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265
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June 2, 2023
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Rank_genes_groups_dotplot do not display legend color
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0
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162
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May 30, 2023
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Current status of dask support (and on disk sparse arrays)
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1
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403
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May 25, 2023
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Add new gene/var to scanpy object
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0
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204
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May 25, 2023
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HVG selection 'flavors'
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1
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205
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May 25, 2023
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Help concatenating var for cite seq
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2
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437
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May 24, 2023
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Read_10x_h5 Error
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1
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478
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May 23, 2023
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Reading in data with scanpy.read_10x_mtx gives back KeyError:1 when features.tsv contains only one column (gene symbols) and ValueError when adding 2 columns (gene ids and feature types)(
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0
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574
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May 17, 2023
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Is it acceptable practice to correct cell labels based on UMAP coordinates?
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0
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211
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May 12, 2023
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I want to draw dendrogram on both x and y axes in scanpy's sc.pl .dotplot
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0
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357
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May 9, 2023
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Violin plot - subset vs. all cells
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0
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263
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May 8, 2023
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Failed to import scanpy on jupyter notebook
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0
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261
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May 8, 2023
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Batch effect correction using combat
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2
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483
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May 4, 2023
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