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Differential expression genes: test to use?
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0
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382
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April 2, 2024
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Leiden clustering gives me different results when I run it
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1
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529
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April 1, 2024
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Does Scanpy stores raw count as int or float?
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1
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469
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March 25, 2024
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Sc.pl.draw_graph
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1
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302
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March 19, 2024
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Normalized data found instead of raw counts
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2
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996
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March 18, 2024
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Sc.pl.draw_graph is strongly affected by the outliers
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0
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138
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March 18, 2024
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How to reuse cmap for other plots?
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3
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435
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March 9, 2024
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How to get dot values from `sc.pl.dotplot()`?
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1
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842
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March 1, 2024
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Remove genes from highly variable genes
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1
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839
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February 21, 2024
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Converting tab-delimited files to adata in a memory-efficient way
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3
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261
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February 21, 2024
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ModuleNotFoundErrror: no module named "importlib.metadata"
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4
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2505
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February 15, 2024
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Error with cyclone ['DataFrame' object has no attribute 'iteritems' ]
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0
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249
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February 12, 2024
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Plots shifted when using scanpy in R markdown
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0
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153
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February 1, 2024
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Trying to read custom genome using sc.read_10x_h5
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0
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386
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January 26, 2024
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Heatmap cannot be assigned as a subplot
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1
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455
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January 16, 2024
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Umap shapes different for the same dataset
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1
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355
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January 15, 2024
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Mismatch between MAST DE results and dotplot
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0
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178
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January 9, 2024
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Pl.dotplot : legend(mean expression in group) number is so large
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1
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379
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January 9, 2024
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Option to plot separate umaps for concatenated datasets
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4
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1253
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December 27, 2023
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Weird oval umap cluster
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0
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274
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December 25, 2023
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Differential gene expression - normalize gene values?
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0
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247
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December 6, 2023
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Error when saving adata with adata.write_h5ad(): "Above error raised while writing key 'names' of to /"
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2
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2374
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December 3, 2023
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UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored
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8
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7909
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December 1, 2023
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Methods of calculating graphs
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0
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287
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November 9, 2023
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Scanpy equivalent of Seurat's FindConservedMarkers
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0
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343
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November 8, 2023
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Correlation matrix values
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0
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430
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November 8, 2023
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Reading matrix.mtx with "real" number format
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0
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395
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October 29, 2023
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Contour Plot based on gene expression or score
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0
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532
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October 26, 2023
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How to show the cells on my umap projection based on barcodes
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2
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606
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October 12, 2023
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Run scanpy.pp.neighbors and UMAP on a different layer other than X?
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2
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1013
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October 11, 2023
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