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Run scanpy.pp.neighbors and UMAP on a different layer other than X?
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2
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1109
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October 11, 2023
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Specify prefix with regular expression in scanpy.read_10x_mtx()
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0
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334
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October 2, 2023
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How to ScanPy cluster already CPM normalized/log transformed data?
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6
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1488
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October 1, 2023
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Expression_cutoff optiion from scanpy.pl.dotplot function
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0
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270
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September 28, 2023
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Gene shows up in dotplot, but it's not present in var_names
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1
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605
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September 16, 2023
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Normalization on rpkm data
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0
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272
|
September 11, 2023
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Error when draw UMAP: object has no attribute 'get_cmap'
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4
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3336
|
September 5, 2023
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Set dtype to np.float32 and memory conservation
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0
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306
|
September 1, 2023
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Comparing number of differentially expressed genes (DEGs)
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0
|
407
|
August 31, 2023
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Why scanpy computes HVGs based on the data after log1p?
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0
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370
|
August 28, 2023
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Customizing Dendrogram and Cluster Names Placement in sc.pl.matrixplot
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0
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477
|
August 18, 2023
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How can I adjust the legend in the Scanpy dotplot?
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0
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725
|
August 14, 2023
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Missing pre-processed dataset in h5ad format (scanorama tutorial)
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0
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303
|
August 8, 2023
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Extracting genes unique to only one cluster/cell type
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0
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282
|
August 7, 2023
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How to retain gene only present/mapped in one of the dataset before integration?
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0
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273
|
August 1, 2023
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Apply sc.pp.highly_variable_genes to SCT-normalized residuals or counts
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0
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338
|
July 27, 2023
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How to find HVG in Seurat-integrated data?
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1
|
667
|
July 27, 2023
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Error scanpy pbmc data
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4
|
742
|
July 25, 2023
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Best pre-processing steps for sc.tl.ingest()?
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0
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749
|
July 20, 2023
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I am getting an error with sc.pp.neighbours()
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0
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788
|
July 10, 2023
|
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Regressing out variables in pearson residual normalization
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2
|
702
|
July 7, 2023
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CITEsq loading in RNA and ADT data
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4
|
1006
|
July 6, 2023
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Remove certain cells that look like doublets by gene expression levels
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0
|
503
|
July 4, 2023
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How I can use big data with scanpy?
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1
|
699
|
July 3, 2023
|
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Problem in PerformanceWarning
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1
|
1064
|
June 30, 2023
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"ValueError: cannot specify integer `bins` when input data contains infinity" in multi sample data
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6
|
5270
|
June 27, 2023
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Scanpy matrixplot dendrogram by both axes
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0
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381
|
June 23, 2023
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Reorder dendrogram/heatmap for pl.rank_genes_groups_heatmap
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0
|
487
|
June 22, 2023
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Obtain pixel grid from scanpy.pl.spatial
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0
|
333
|
June 21, 2023
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How to randomize plotting order of cells in sc.pl.umap
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0
|
624
|
June 17, 2023
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