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Analyse sub-sections of a spatial visium slide
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0
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282
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April 28, 2023
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Question on handling sc.pp.regress_out() in scanpy
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0
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661
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April 24, 2023
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Error with sc.tl.rank_genes_groups : invalid value encountered in log2 self.stats
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0
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371
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April 22, 2023
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Regress out cell cycle
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0
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969
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April 20, 2023
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Heatmap group color repeated for >20 groups
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1
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437
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April 20, 2023
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Trouble Reading .h5 files
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1
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1858
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April 13, 2023
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Layer (counts) loss after adata.raw.to_adata()
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0
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559
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April 13, 2023
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No unique function for adata.obs
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1
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392
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April 7, 2023
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Random umap and clustering resullt
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5
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838
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April 7, 2023
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Better input data for finding DEGs
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0
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198
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April 5, 2023
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Finding markers (DEGs) methods
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0
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223
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April 5, 2023
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Problems subsetting
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0
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394
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March 27, 2023
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Subclustering of one single cluster in my UMAP Plot
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0
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419
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March 23, 2023
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Question about Github Issue
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2
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814
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March 22, 2023
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How to read in the Spatial object directly from gene count matrix (.mtx) file and related images (without HDF5 file)?
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0
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209
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March 22, 2023
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How to assign the specific colors to cell types on umaps across different dataset?
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2
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1155
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March 20, 2023
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How to make a UMAP for single cell data and color cells by average expression of a list of genes in scanpy?
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1
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563
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March 16, 2023
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Scanpy HVG batch_key
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1
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584
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March 16, 2023
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Read_10x_mtx error UnicodeDecodeError:
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1
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470
|
March 16, 2023
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Subsetting populations
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1
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380
|
March 16, 2023
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Trouble Making a Z-Score Heatmap
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1
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734
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March 14, 2023
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How to control axis test angle?
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1
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805
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March 11, 2023
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Reading in a text file and adata.obs
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1
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387
|
March 11, 2023
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Issue with logfoldchanges in scanpy.tl.rank_genes_groups
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1
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1473
|
March 11, 2023
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Ways to write/load h5ad file faster?
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1
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575
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March 10, 2023
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Two dataset after ingest, can I compare gene expression?
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0
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243
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March 1, 2023
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scanpy.pp.highly_variable_genes and “raise KeyError”
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1
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1078
|
February 24, 2023
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Metaclass Conflict from trying to Import Scanpy
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3
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4647
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February 20, 2023
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Choosing a Clustering Resolution
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1
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1171
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February 17, 2023
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How to handle data lognormalization when using highly_variable_genes() with flavor seurat_v3?
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3
|
1004
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February 3, 2023
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