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Analyse sub-sections of a spatial visium slide
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0
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354
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April 28, 2023
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Question on handling sc.pp.regress_out() in scanpy
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0
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992
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April 24, 2023
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Error with sc.tl.rank_genes_groups : invalid value encountered in log2 self.stats
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0
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629
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April 22, 2023
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Regress out cell cycle
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0
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1602
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April 20, 2023
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Heatmap group color repeated for >20 groups
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1
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609
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April 20, 2023
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Trouble Reading .h5 files
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1
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3090
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April 13, 2023
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Layer (counts) loss after adata.raw.to_adata()
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0
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892
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April 13, 2023
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No unique function for adata.obs
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1
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554
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April 7, 2023
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Random umap and clustering resullt
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5
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1229
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April 7, 2023
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Better input data for finding DEGs
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0
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246
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April 5, 2023
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Finding markers (DEGs) methods
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0
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259
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April 5, 2023
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Problems subsetting
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0
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527
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March 27, 2023
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Subclustering of one single cluster in my UMAP Plot
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0
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560
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March 23, 2023
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Question about Github Issue
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2
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1034
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March 22, 2023
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How to read in the Spatial object directly from gene count matrix (.mtx) file and related images (without HDF5 file)?
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0
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315
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March 22, 2023
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How to assign the specific colors to cell types on umaps across different dataset?
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2
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2025
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March 20, 2023
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How to make a UMAP for single cell data and color cells by average expression of a list of genes in scanpy?
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1
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766
|
March 16, 2023
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Scanpy HVG batch_key
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1
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984
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March 16, 2023
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Read_10x_mtx error UnicodeDecodeError:
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1
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621
|
March 16, 2023
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Subsetting populations
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1
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693
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March 16, 2023
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How to control axis test angle?
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1
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1099
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March 11, 2023
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Reading in a text file and adata.obs
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1
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487
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March 11, 2023
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Issue with logfoldchanges in scanpy.tl.rank_genes_groups
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1
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2377
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March 11, 2023
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Ways to write/load h5ad file faster?
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1
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958
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March 10, 2023
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Two dataset after ingest, can I compare gene expression?
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0
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293
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March 1, 2023
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scanpy.pp.highly_variable_genes and “raise KeyError”
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1
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1334
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February 24, 2023
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Metaclass Conflict from trying to Import Scanpy
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3
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6175
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February 20, 2023
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Choosing a Clustering Resolution
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1
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2111
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February 17, 2023
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How to handle data lognormalization when using highly_variable_genes() with flavor seurat_v3?
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3
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1467
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February 3, 2023
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Correct use of .copy() when working with layers
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0
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944
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February 2, 2023
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