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How can I know the Harmony package version when using .external.pp.harmony_integrate?
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0
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264
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June 16, 2023
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Oddly high amount of clusters during subcluster analysis using Leiden
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0
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671
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June 12, 2023
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Using pearson residuals for differential gene analysis
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0
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574
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June 5, 2023
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How to match all sizes of spatial plots within a subplot
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0
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405
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June 2, 2023
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Rank_genes_groups_dotplot do not display legend color
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0
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256
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May 30, 2023
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Current status of dask support (and on disk sparse arrays)
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1
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853
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May 25, 2023
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Add new gene/var to scanpy object
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0
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366
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May 25, 2023
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HVG selection 'flavors'
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1
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298
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May 25, 2023
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Help concatenating var for cite seq
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2
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680
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May 24, 2023
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Read_10x_h5 Error
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1
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925
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May 23, 2023
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Reading in data with scanpy.read_10x_mtx gives back KeyError:1 when features.tsv contains only one column (gene symbols) and ValueError when adding 2 columns (gene ids and feature types)(
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0
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911
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May 17, 2023
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Is it acceptable practice to correct cell labels based on UMAP coordinates?
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0
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282
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May 12, 2023
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I want to draw dendrogram on both x and y axes in scanpy's sc.pl .dotplot
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0
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669
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May 9, 2023
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Violin plot - subset vs. all cells
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0
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573
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May 8, 2023
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Failed to import scanpy on jupyter notebook
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0
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513
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May 8, 2023
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Batch effect correction using combat
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2
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880
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May 4, 2023
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Analyse sub-sections of a spatial visium slide
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0
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397
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April 28, 2023
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Question on handling sc.pp.regress_out() in scanpy
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0
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1168
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April 24, 2023
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Error with sc.tl.rank_genes_groups : invalid value encountered in log2 self.stats
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0
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719
|
April 22, 2023
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Regress out cell cycle
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0
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1799
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April 20, 2023
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Heatmap group color repeated for >20 groups
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1
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691
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April 20, 2023
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Trouble Reading .h5 files
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1
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3602
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April 13, 2023
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Layer (counts) loss after adata.raw.to_adata()
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0
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1040
|
April 13, 2023
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No unique function for adata.obs
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1
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666
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April 7, 2023
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Random umap and clustering resullt
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5
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1552
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April 7, 2023
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Better input data for finding DEGs
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0
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264
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April 5, 2023
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Finding markers (DEGs) methods
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0
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282
|
April 5, 2023
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Problems subsetting
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0
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594
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March 27, 2023
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Subclustering of one single cluster in my UMAP Plot
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0
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632
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March 23, 2023
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Question about Github Issue
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2
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1129
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March 22, 2023
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