I’m in to process of learning single cell analysis. Thus far I’ve within my first week made good progress in analysing single cell data by using Scanpy.
However I’ve hade som trouble analysing a publicly available CITE-seq dataset. My problem is very basic, the data is uploaded in this manner:
I’ve only found tutorials showing how to load h5.files containing the above, but I’ve had a hard time figuring out how to create an AnnData containing all of the above.
I would be very happy for any of your suggestions.