CITEsq loading in RNA and ADT data

Hello everyone,

I’m in to process of learning single cell analysis. Thus far I’ve within my first week made good progress in analysing single cell data by using Scanpy.

However I’ve hade som trouble analysing a publicly available CITE-seq dataset. My problem is very basic, the data is uploaded in this manner:

ADT_barcodes.tsv.gz|
ADT_counts.txt.gz
ADT_tags.tsv.gz|
barcodes.tsv.gz|
features.tsv.gz|
hashtags.csv.gz|
matrix.mtx.gz|

I’ve only found tutorials showing how to load h5.files containing the above, but I’ve had a hard time figuring out how to create an AnnData containing all of the above.

I would be very happy for any of your suggestions.

I just realized I made a post with a very similar problem as yours. Did you figure out a solution?