|
About the scirpy category
|
|
0
|
368
|
March 4, 2022
|
|
Error ir.tl.summarize_clonal_expansion
|
|
2
|
32
|
September 2, 2025
|
|
How to retreive the V,D,J gene segment idenifiers and CD3 sequence give a clone_id?
|
|
1
|
75
|
April 18, 2025
|
|
Cannot load filtered_contig_annotations.csv
|
|
6
|
319
|
March 3, 2025
|
|
Integrating TRUST4 outputs into anndata GEX
|
|
3
|
113
|
January 22, 2025
|
|
Import scirpy v0.19.0 failing due to numpy error
|
|
2
|
180
|
November 12, 2024
|
|
Installation of scirpy 0.11.1 fails due to parasail
|
|
2
|
113
|
November 9, 2024
|
|
NotImplementedError: Cannot create a view of an awkward array with __array__ parameter
|
|
9
|
222
|
November 6, 2024
|
|
`ir.tl.chain_qc(adata)` error message with scirpy 0.18.0
|
|
3
|
66
|
October 17, 2024
|
|
TypeError with ir.tl.define_clonotype_clusters
|
|
3
|
64
|
July 9, 2024
|
|
Cellranger_aggr data
|
|
1
|
123
|
June 19, 2024
|
|
Produce clonotype abundance barplot based on ir.pl.group_abundance by order of normalised abundance
|
|
3
|
143
|
May 17, 2024
|
|
How to suppress NaN in clonotype_network plots?
|
|
0
|
117
|
May 14, 2024
|
|
Defines clonotype clusters using TCRdist distance matrix
|
|
3
|
385
|
May 7, 2024
|
|
Unexpected chain pairing status while converting AirrCells to AnnData
|
|
4
|
179
|
March 23, 2024
|
|
Define dual IR pairs as new cell
|
|
7
|
222
|
February 27, 2024
|
|
TCR Metrics for Pairwise Distance Matrix
|
|
3
|
357
|
January 26, 2024
|
|
Clonotype_network
|
|
2
|
173
|
January 26, 2024
|
|
Multi_chain and extra_chains
|
|
1
|
126
|
January 26, 2024
|
|
Help with analyzing BD Rhapsody?
|
|
3
|
295
|
October 4, 2023
|
|
Problem with airr data loading
|
|
11
|
783
|
October 3, 2023
|
|
Interpreting scirpy's ir_dist_aa_alignment distances
|
|
1
|
258
|
August 22, 2023
|
|
How to edit and filter awkward array created by scirpy?
|
|
1
|
348
|
August 7, 2023
|
|
Loading data into adata.obsm['airr'] of an existing scRNAseq object
|
|
2
|
388
|
July 24, 2023
|
|
Bar plot using muon between scRNA-seq and scTCR-seq&scBCR-seq?
|
|
4
|
401
|
July 6, 2023
|
|
Not able to combine two samples for TCR analysis
|
|
5
|
439
|
June 30, 2023
|
|
Problems with querying reference databases or datasets for annotation of IRs
|
|
1
|
305
|
June 29, 2023
|
|
How to change the category order in `ir.pl.group_abundance` stacked barplot column
|
|
0
|
324
|
June 5, 2023
|
|
Plotting repertoire overlap as a heatmap with scirpy
|
|
2
|
481
|
March 29, 2023
|
|
Access to antibody sequence information in scirpy anndata object
|
|
1
|
307
|
February 20, 2023
|