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About the scirpy category
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0
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369
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March 4, 2022
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Confusion on "no IR" definition in scirpy
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1
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13
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May 25, 2026
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Error ir.tl.summarize_clonal_expansion
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2
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35
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September 2, 2025
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How to retreive the V,D,J gene segment idenifiers and CD3 sequence give a clone_id?
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1
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81
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April 18, 2025
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Cannot load filtered_contig_annotations.csv
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6
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329
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March 3, 2025
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Integrating TRUST4 outputs into anndata GEX
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3
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125
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January 22, 2025
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Import scirpy v0.19.0 failing due to numpy error
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2
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185
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November 12, 2024
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Installation of scirpy 0.11.1 fails due to parasail
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2
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117
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November 9, 2024
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NotImplementedError: Cannot create a view of an awkward array with __array__ parameter
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9
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227
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November 6, 2024
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`ir.tl.chain_qc(adata)` error message with scirpy 0.18.0
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3
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68
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October 17, 2024
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TypeError with ir.tl.define_clonotype_clusters
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3
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67
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July 9, 2024
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Cellranger_aggr data
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1
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127
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June 19, 2024
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Produce clonotype abundance barplot based on ir.pl.group_abundance by order of normalised abundance
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3
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147
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May 17, 2024
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How to suppress NaN in clonotype_network plots?
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0
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119
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May 14, 2024
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Defines clonotype clusters using TCRdist distance matrix
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3
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394
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May 7, 2024
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Unexpected chain pairing status while converting AirrCells to AnnData
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4
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182
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March 23, 2024
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Define dual IR pairs as new cell
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7
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224
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February 27, 2024
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TCR Metrics for Pairwise Distance Matrix
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3
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362
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January 26, 2024
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Clonotype_network
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2
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176
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January 26, 2024
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Multi_chain and extra_chains
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1
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127
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January 26, 2024
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Help with analyzing BD Rhapsody?
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3
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299
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October 4, 2023
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Problem with airr data loading
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11
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797
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October 3, 2023
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Interpreting scirpy's ir_dist_aa_alignment distances
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1
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264
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August 22, 2023
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How to edit and filter awkward array created by scirpy?
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1
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351
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August 7, 2023
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Loading data into adata.obsm['airr'] of an existing scRNAseq object
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2
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392
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July 24, 2023
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Bar plot using muon between scRNA-seq and scTCR-seq&scBCR-seq?
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4
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407
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July 6, 2023
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Not able to combine two samples for TCR analysis
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5
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448
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June 30, 2023
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Problems with querying reference databases or datasets for annotation of IRs
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1
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310
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June 29, 2023
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How to change the category order in `ir.pl.group_abundance` stacked barplot column
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0
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326
|
June 5, 2023
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Plotting repertoire overlap as a heatmap with scirpy
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2
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484
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March 29, 2023
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