Cellranger_aggr data

Help scirpy
1

Hello, I have a question for you

The filtered_contig_annotations.csv file for all samples in the 10X single-cell Cellranger_aggr data has a filtered_contig_annotations.csv analysis Scirpy for each sample, with 10 samples. Is there a difference between them? Which data is better to use?

10X single-cell Cellranger_aggr：cellranger-7.2.0/cellranger aggr

2

As far as I can tell, there’s no benefit in running cellranger aggr. I would typically read the individual files and aggregate them in Python.