Validation loss lower than the training loss in scvi
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6
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140
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May 4, 2023
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Problems importing scvi [Windows]
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17
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1334
|
May 3, 2023
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Dataset integration and analysis
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3
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105
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May 3, 2023
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.SOLO.from_scvi_model() throwing AttributeError
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2
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129
|
May 3, 2023
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Analyse sub-sections of a spatial visium slide
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0
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48
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April 28, 2023
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Scanpy cell-based normalization
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0
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49
|
April 26, 2023
|
Is the AnnData summary graphic in the documentation/Fig 1A of the Virshup, et al. bioRxiv pre-print creative commons license?
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0
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36
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April 25, 2023
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Removing an AnnData Object from Memory
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1
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83
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April 25, 2023
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Sorting annData object by observations or variables?
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0
|
50
|
April 25, 2023
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Question on handling sc.pp.regress_out() in scanpy
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0
|
80
|
April 24, 2023
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Error with sc.tl.rank_genes_groups : invalid value encountered in log2 self.stats
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0
|
64
|
April 22, 2023
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Regress out cell cycle
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0
|
93
|
April 20, 2023
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Pl.ligrec error in latest version of squidpy
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3
|
148
|
April 20, 2023
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Heatmap group color repeated for >20 groups
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1
|
89
|
April 20, 2023
|
Choosing a Batch Key
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2
|
110
|
April 18, 2023
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scANVI relables known cells with known types incorrectly
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13
|
810
|
April 18, 2023
|
Muon function mofa.plot_factors
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2
|
70
|
April 18, 2023
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AnnLoader for mudata?
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1
|
61
|
April 18, 2023
|
Is it possible to include leading edge genes in decoupler.run_gsea output?
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1
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73
|
April 17, 2023
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Transferring labels from combined embedding back to query with scArches
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2
|
69
|
April 14, 2023
|
M1 MAX: GPU available, but not used
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|
4
|
154
|
April 13, 2023
|
Trouble Reading .h5 files
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1
|
129
|
April 13, 2023
|
Layer (counts) loss after adata.raw.to_adata()
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0
|
84
|
April 13, 2023
|
Question about diffusion map "gaussian" implementation
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0
|
37
|
April 12, 2023
|
Hyperparameter optimization of SCVI model using the autotune package
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|
8
|
161
|
April 12, 2023
|
How to fix ModuleNotFoundError: No module named 'skmisc'?
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4
|
1183
|
April 11, 2023
|
_base_model.load() throwing weird errors when loading saved model
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|
4
|
71
|
April 10, 2023
|
What is the best way to extract a "full" batch effect corrected count matrix from scVI model?
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|
2
|
499
|
April 7, 2023
|
No unique function for adata.obs
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|
1
|
72
|
April 7, 2023
|
Regressing out variables in pearson residual normalization
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|
1
|
161
|
April 7, 2023
|