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Converting view of a backed anndata object into non-view/non-backed
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1
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72
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November 13, 2023
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Methods of calculating graphs
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0
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41
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November 9, 2023
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Raw count input for scVI cell clustering
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2
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68
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November 8, 2023
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Scanpy equivalent of Seurat's FindConservedMarkers
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0
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45
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November 8, 2023
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Correlation matrix values
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0
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53
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November 8, 2023
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Error in Atlas-level-integration-of-lung-data Tutorial
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4
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116
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November 1, 2023
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Reading matrix.mtx with "real" number format
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0
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72
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October 29, 2023
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Contour Plot based on gene expression or score
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0
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100
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October 26, 2023
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mrVI hyperparameter tunning
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2
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103
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October 25, 2023
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Increase scVI integration speed
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5
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188
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October 24, 2023
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scVI integration using two batch keys
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5
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234
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October 24, 2023
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Loading ATAC dataset
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3
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304
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October 23, 2023
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RuntimeWarning: The lr scheduler dict contains the key(s)
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0
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86
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October 23, 2023
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How to show the cells on my umap projection based on barcodes
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2
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185
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October 12, 2023
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Is it possible to get the saved model from h5ad file?
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3
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130
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October 17, 2023
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MultiVI error on only paired data
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2
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149
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October 17, 2023
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Mrvi error because of LossRecorder to LossOutput change
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1
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114
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October 12, 2023
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Model doesn't contain validation metrics
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7
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105
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October 12, 2023
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Run scanpy.pp.neighbors and UMAP on a different layer other than X?
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2
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155
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October 11, 2023
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Enviroment.yml file? scvi installation problems
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8
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200
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October 11, 2023
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Error with import scvi _
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1
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162
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October 10, 2023
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Error message cannot import name 'set_verbosity' from 'scvi._settings' when importing scvi
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6
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393
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October 9, 2023
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Query about transfer learning / scArches in SCVI
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0
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83
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October 7, 2023
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Help with analyzing BD Rhapsody?
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3
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104
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October 4, 2023
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Problem with airr data loading
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11
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183
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October 3, 2023
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Specify prefix with regular expression in scanpy.read_10x_mtx()
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0
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91
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October 2, 2023
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How to ScanPy cluster already CPM normalized/log transformed data?
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6
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715
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October 1, 2023
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Expression_cutoff optiion from scanpy.pl.dotplot function
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0
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74
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September 28, 2023
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Plotting only transcripts
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3
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92
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September 27, 2023
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Pl.ligrec error in latest version of squidpy
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4
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334
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September 27, 2023
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