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Dimensionality reduction of 10x visium spatial datasets
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1
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47
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January 15, 2023
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Issue reading h5ad file
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1
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51
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January 12, 2023
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Issue with logfoldchanges in scanpy.tl.rank_genes_groups
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0
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33
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January 11, 2023
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inferCNVpy after running scVI with batch as key
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3
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90
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January 11, 2023
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Muon: multiple set of data comparative analysis
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1
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59
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January 9, 2023
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Error when using 'get_normalized_expression'
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0
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33
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January 5, 2023
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How does scanpy work for mixed species single cell RNAseq data from 10x? What is the best way to look at one specific species from that dataset?
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1
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26
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January 6, 2023
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Which values do you use to visualise gene expression?
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1
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88
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January 5, 2023
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DestVI scRNA-seq considerations
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3
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58
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January 5, 2023
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Is it possible to do second round integration via X_normalized_scVI normalized counts?
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0
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32
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January 5, 2023
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Sc.pl.heatmap ,clusters, ascending order
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0
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31
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January 3, 2023
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Adata gene intersection problem
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0
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31
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January 2, 2023
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Which is the best method to compare the differently expressed genes between 2 clusters `sc.tl.rank_genes_groups` or `MAST.zlm`?
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0
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38
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January 1, 2023
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Scanpy.tl.rank_genes_groups, layer= does not appear to be working
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1
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50
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December 31, 2022
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Anndata.concatenate() with two 10x multiome datasets?
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2
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69
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December 29, 2022
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MrVI input and interpretation
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6
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138
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December 27, 2022
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Loading ATAC dataset
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1
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59
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December 26, 2022
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Selection of HVG in scVI
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3
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130
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December 20, 2022
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Help importing scvi in conda environment on new Mac M1
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1
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45
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December 20, 2022
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About VAE._regular_inference()
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3
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53
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December 19, 2022
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Cannot transfer setup without `extend_categories = True`
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2
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43
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December 15, 2022
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DE between conditions in a cluster
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4
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68
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December 14, 2022
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Problem with PAGA graph plotting
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0
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50
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December 14, 2022
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Problems importing scvi [Windows]
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12
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339
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December 13, 2022
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Label transfer with SCVI-SCANVI pipeline changes (predicts wrong) labels in ref data
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6
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89
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December 12, 2022
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Segfault on M2 mac with scanpy
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4
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62
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December 12, 2022
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How to fix ModuleNotFoundError: No module named 'skmisc'?
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3
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87
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December 10, 2022
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Getting the parameters and their names of scVI
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1
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54
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December 10, 2022
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Reference mapping with missing genes (vars) in SCVI / scANVI
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1
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130
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December 10, 2022
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Can gimvi be used to symmetrically impute missing genes in two spatial datasets?
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1
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47
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December 10, 2022
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