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Scvi-tools solo return synthetic doublets
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3
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22
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March 18, 2025
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SysVI model and normalized expression
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1
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51
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March 15, 2025
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Scvi-tools and xenium
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7
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324
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March 13, 2025
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Unexpected exception formatting exception when prepare_query_anndata
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4
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50
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March 11, 2025
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DestVI: how to load a DestVI model that was saved as a pickle
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1
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31
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March 9, 2025
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Parameters in training model for integrating datasets with scVI in R
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13
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74
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March 9, 2025
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Understanding batch-corrected counts in scVI
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6
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112
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March 9, 2025
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Add new data to existing integration
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3
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49
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March 7, 2025
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Split dotplot by condition
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2
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104
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March 3, 2025
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Cannot load filtered_contig_annotations.csv
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6
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239
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March 3, 2025
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Issue with retrain scANVI model
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1
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35
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March 3, 2025
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Issue with scVI model device
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2
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33
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March 3, 2025
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In which direction is the LCF calculated when using the function differential_expression?
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1
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23
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March 2, 2025
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Rank_genes_groups pts and DE
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0
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52
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February 27, 2025
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Efficient pseudobulking
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2
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48
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February 27, 2025
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Scanpy.rank_genes_groups after pp.regress_out
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0
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22
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February 27, 2025
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GIMVI genes imputation
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1
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27
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February 26, 2025
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Import annadata failed: Intel oneMKL FATAL ERROR: Cannot load mkl_intel_thread.2.dll
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1
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328
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February 26, 2025
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Function in scanvi that can help compute the probability of having a latent cell state given a cell type
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1
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26
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February 26, 2025
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Set of guidelines for SCVI and VisiumHD data
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0
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41
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February 25, 2025
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Reg negative and positive TF activity values
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0
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15
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February 24, 2025
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Good spatial tutorial for beginners
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1
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72
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February 23, 2025
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Differential Expression and Batch Correction
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1
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111
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February 20, 2025
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SOLO/scVI .train() error related to batch_size?
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6
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1244
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February 20, 2025
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scVelo between conditions
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0
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13
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February 20, 2025
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Really hard to plot categories palette
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1
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37
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February 14, 2025
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Help with harmony and scanpy
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3
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206
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February 14, 2025
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I have always had a question: do I need to scale my adata before running sc.tl.score_genes?
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4
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605
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February 14, 2025
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Pertpy: AttributeError: module 'pertpy.plot' has no attribute 'coda'
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5
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621
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February 14, 2025
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Dealing with multiple samples
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9
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599
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February 13, 2025
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