Sc.tl.leiden restrict_to issue
|
|
3
|
74
|
February 21, 2024
|
Extra parameters on infercnvpy
|
|
1
|
38
|
February 21, 2024
|
Remove genes from highly variable genes
|
|
1
|
74
|
February 21, 2024
|
Loading model.pt in R
|
|
0
|
38
|
February 21, 2024
|
Converting tab-delimited files to adata in a memory-efficient way
|
|
3
|
72
|
February 21, 2024
|
Reloading saved model gives different results
|
|
7
|
117
|
February 20, 2024
|
Clustering with X_scVI after removing doublets
|
|
0
|
43
|
February 20, 2024
|
Preserving biological variability in scVI sample integration
|
|
4
|
120
|
February 16, 2024
|
Macbook M1 M2 mps acceleration with scVI
|
|
4
|
227
|
February 16, 2024
|
Trouble with scvi environment from reticulate in R to run seurat pipeline
|
|
1
|
89
|
February 16, 2024
|
How to compute the integration metrics
|
|
1
|
56
|
February 16, 2024
|
Sc.pl.draw_graph
|
|
0
|
42
|
February 16, 2024
|
Error when training model on M3 Max MPS
|
|
5
|
420
|
February 16, 2024
|
Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
|
|
1
|
82
|
February 16, 2024
|
Running totalVI by batch
|
|
1
|
56
|
February 16, 2024
|
Cannot modify AnnData object
|
|
2
|
113
|
February 16, 2024
|
ModuleNotFoundErrror: no module named "importlib.metadata"
|
|
4
|
240
|
February 15, 2024
|
Saving scCODA proportion data to a csv in Pertpy
|
|
1
|
52
|
February 15, 2024
|
Differences between .X, .raw.X, and .raw in anndata object
|
|
5
|
2768
|
February 13, 2024
|
Error with cyclone ['DataFrame' object has no attribute 'iteritems' ]
|
|
0
|
66
|
February 12, 2024
|
Failure to remove a batch_key/ effect of number of LVs
|
|
6
|
149
|
February 9, 2024
|
Scvi and subtyping
|
|
1
|
111
|
February 9, 2024
|
SCVI tools with large datasets
|
|
2
|
154
|
February 9, 2024
|
Using my own datasets with spatialData
|
|
9
|
61
|
February 8, 2024
|
Subsetting/Re-normalization issue
|
|
0
|
83
|
February 5, 2024
|
Computing neighbors from X_scANVI representation
|
|
0
|
60
|
February 4, 2024
|
How to save intermediate checkpoints?
|
|
3
|
266
|
February 3, 2024
|
Using a model with categorical_covariate_key instead of batch_key
|
|
2
|
138
|
February 1, 2024
|
Plots shifted when using scanpy in R markdown
|
|
0
|
42
|
February 1, 2024
|
AttributeError: module 'jax' has no attribute 'Device'
|
|
9
|
2836
|
January 31, 2024
|