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Error when using scVI.model.train
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2
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33
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August 19, 2024
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Understanding the behaviour of sc.pp.highly_variable_genes with a batch_key and different values of n_top_genes
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1
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36
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August 15, 2024
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Mappingproxy is not defined - spatialdata-io
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1
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8
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August 12, 2024
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Scvi - denoising single-cell/single-nucleus transcription data
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3
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87
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August 8, 2024
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scVI integration set batch_key and poor Umap result
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3
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41
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August 7, 2024
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Read failure with aligned example data; fails on "shapes"
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2
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17
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August 7, 2024
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Is the output of `get_normalized_expression` batch-corrected or not?
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2
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43
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August 5, 2024
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I have always had a question: do I need to scale my adata before running sc.tl.score_genes?
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3
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113
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August 2, 2024
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Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI
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4
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30
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August 1, 2024
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Filtering out a subset of genes in adata
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3
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42
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July 31, 2024
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MrVI input and interpretation
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23
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1011
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July 31, 2024
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Sc.pl.umap scales
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1
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14
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July 30, 2024
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P-values for scanpy.tl.rank_genes_groups
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1
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33
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July 30, 2024
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Stannotation with scanpy and seaborn
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0
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12
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July 30, 2024
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Benchmarking with scib-metrics: Graph Connectivity as a batch correction metric
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5
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39
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July 25, 2024
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WNN neighborhood graph construction failing
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1
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191
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July 23, 2024
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How can I load an anndata object when 'raw' was saved as a dictionary
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1
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37
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July 23, 2024
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How to subset anndata variables, but still store the removed variables elsewhere for downstream analysis?
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1
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23
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July 23, 2024
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Do I need to scale my adata before running sc.tl.score_genes?
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2
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96
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July 23, 2024
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Some default parameter annotations in API are confusing
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2
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34
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July 23, 2024
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Batch correction on different conditions
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1
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18
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July 23, 2024
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AdversarialTrainingPlan in _trainingplans.py
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1
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8
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July 23, 2024
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Different UMAPs for same dataset with scANVI
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6
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40
|
July 22, 2024
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Differences in library sizes between reference and query
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3
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17
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July 22, 2024
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Integration with multiple categorical variable
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1
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12
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July 22, 2024
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Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix'
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4
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92
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July 21, 2024
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MrVI min cells per sample, cross tissue samples
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1
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24
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July 20, 2024
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Multithreading error
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1
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64
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July 16, 2024
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Error with DefaultAssay in R when Integrating Data Using scvi-tools
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4
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75
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July 16, 2024
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Scanpy.tl.rank_genes_groups with wilcoxon returns same score for multiple genes
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0
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44
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July 15, 2024
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