|
Validation loss lower than the training loss in scvi
|
|
6
|
140
|
May 4, 2023
|
|
Problems importing scvi [Windows]
|
|
17
|
1334
|
May 3, 2023
|
|
Dataset integration and analysis
|
|
3
|
105
|
May 3, 2023
|
|
.SOLO.from_scvi_model() throwing AttributeError
|
|
2
|
129
|
May 3, 2023
|
|
Analyse sub-sections of a spatial visium slide
|
|
0
|
48
|
April 28, 2023
|
|
Scanpy cell-based normalization
|
|
0
|
49
|
April 26, 2023
|
|
Is the AnnData summary graphic in the documentation/Fig 1A of the Virshup, et al. bioRxiv pre-print creative commons license?
|
|
0
|
36
|
April 25, 2023
|
|
Removing an AnnData Object from Memory
|
|
1
|
83
|
April 25, 2023
|
|
Sorting annData object by observations or variables?
|
|
0
|
50
|
April 25, 2023
|
|
Question on handling sc.pp.regress_out() in scanpy
|
|
0
|
80
|
April 24, 2023
|
|
Error with sc.tl.rank_genes_groups : invalid value encountered in log2 self.stats
|
|
0
|
64
|
April 22, 2023
|
|
Regress out cell cycle
|
|
0
|
93
|
April 20, 2023
|
|
Pl.ligrec error in latest version of squidpy
|
|
3
|
148
|
April 20, 2023
|
|
Heatmap group color repeated for >20 groups
|
|
1
|
89
|
April 20, 2023
|
|
Choosing a Batch Key
|
|
2
|
110
|
April 18, 2023
|
|
scANVI relables known cells with known types incorrectly
|
|
13
|
810
|
April 18, 2023
|
|
Muon function mofa.plot_factors
|
|
2
|
70
|
April 18, 2023
|
|
AnnLoader for mudata?
|
|
1
|
61
|
April 18, 2023
|
|
Is it possible to include leading edge genes in decoupler.run_gsea output?
|
|
1
|
73
|
April 17, 2023
|
|
Transferring labels from combined embedding back to query with scArches
|
|
2
|
69
|
April 14, 2023
|
|
M1 MAX: GPU available, but not used
|
|
4
|
154
|
April 13, 2023
|
|
Trouble Reading .h5 files
|
|
1
|
129
|
April 13, 2023
|
|
Layer (counts) loss after adata.raw.to_adata()
|
|
0
|
84
|
April 13, 2023
|
|
Question about diffusion map "gaussian" implementation
|
|
0
|
37
|
April 12, 2023
|
|
Hyperparameter optimization of SCVI model using the autotune package
|
|
8
|
161
|
April 12, 2023
|
|
How to fix ModuleNotFoundError: No module named 'skmisc'?
|
|
4
|
1183
|
April 11, 2023
|
|
_base_model.load() throwing weird errors when loading saved model
|
|
4
|
71
|
April 10, 2023
|
|
What is the best way to extract a "full" batch effect corrected count matrix from scVI model?
|
|
2
|
499
|
April 7, 2023
|
|
No unique function for adata.obs
|
|
1
|
72
|
April 7, 2023
|
|
Regressing out variables in pearson residual normalization
|
|
1
|
161
|
April 7, 2023
|