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Mapping a small reference dataset to a large dataset using scanpy ingest
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0
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24
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August 25, 2022
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How to find HVG in Seurat-integrated data?
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0
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20
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August 24, 2022
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Workaround for loading atac fragments without index file
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0
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27
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August 24, 2022
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Help understanding inheritance for scvi.models
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1
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35
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August 22, 2022
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Merged adata with different dimension but getting stuck at PCA
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0
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33
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August 22, 2022
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Help with concat
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1
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63
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August 17, 2022
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Does CellAssign support categorical_covariate_keys?
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8
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45
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August 11, 2022
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Batch effect not entirely removed in PeakVI
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3
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95
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August 10, 2022
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Problem with plotting spaceranger spatial matrices data
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4
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47
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August 8, 2022
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Spatial datasets integration
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2
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98
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August 8, 2022
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Filter genes in a subset of cells
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0
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32
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August 8, 2022
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SCANVI soft labeling
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1
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133
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August 8, 2022
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Why train VAE twice
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1
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268
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August 8, 2022
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Concatenate anndata with merged rows
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0
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46
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August 5, 2022
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Muon CITE-Seq analysis
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1
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40
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August 5, 2022
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Module 'scanpy' has no attribute 'read_10X_mtx'
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1
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51
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August 5, 2022
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ValueError: `X_pca` does not have enough PCs. Rerun `sc.pp.pca` with adjusted `n_comps`
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1
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40
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August 5, 2022
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Name 'qc_vars' is not defined: how to trouble shoot, help?
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1
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32
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August 5, 2022
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Does AnnData read cell (column) by genes (rows) or the other way around?
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2
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37
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August 5, 2022
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Space between each "groupby" group in sc.pl.heatmap?
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1
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49
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August 4, 2022
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Loading of transposed count matrix
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3
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50
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August 4, 2022
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Difference between n_genes and n_genes_by_counts?
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1
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79
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August 4, 2022
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totalVI NaN loss with few proteins
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7
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350
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August 3, 2022
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Add title to scanpy.pl.heatmap
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2
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50
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July 29, 2022
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Transferring labels from gene expression to SMI spatial transcriptomics data
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1
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53
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July 27, 2022
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How to change the axis limits in scanpy for violin plots
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1
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53
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July 22, 2022
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SCANVI: cannot reproduce predicted cell types as in the tutorial
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0
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41
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July 20, 2022
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Diffmap DPT question
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3
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127
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July 17, 2022
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Error in SCANVI.prepare_query_anndata
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5
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67
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July 14, 2022
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Subsetting Anndata based on Multiple Marker Gene Expression Thresholds
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0
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50
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July 12, 2022
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