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Imputation/Denoise output
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1
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117
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January 15, 2026
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SCANVI Model Loading Issue: Partial Data and Workaround
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1
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83
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January 11, 2026
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Error in training resolvi model
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5
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193
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January 5, 2026
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Predict cell type with scANVI for spatial transcriptomics data (Xenium)
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7
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743
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December 28, 2025
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Remove ribosomal genes driving variation (on PC plot)?
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0
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84
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December 17, 2025
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Sc.pp.filter_genes how to use
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0
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121
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December 16, 2025
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What is the context or history of having both inplace and copy args everywhere?
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1
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77
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December 15, 2025
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Questions on Shapes + Tables vs single AnnData object
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6
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228
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December 11, 2025
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Issue with scVI VAE reconstruction: High sensitivity to library size and poor rank preservation
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1
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188
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December 9, 2025
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Issue with multiVI get_normalized_expression and get_normalized_accessibility
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5
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194
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December 7, 2025
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Scvi 1.4.0. model.differential_expression outputs
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1
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139
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December 7, 2025
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CellFlow as a training framework vs pretrained model
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1
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72
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December 5, 2025
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Draw_graph results in a cloud or nice PAGA-like structure depending on dataset?
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0
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77
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December 4, 2025
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Limited cell types in reference dataset for scANVI
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3
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146
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December 4, 2025
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Seeking guidance and reviewers for AnnData HTML representation PR (#2236)
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2
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95
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December 1, 2025
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Corrected count for resolvi
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1
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213
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November 25, 2025
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Question about complex experiment
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1
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146
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November 25, 2025
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Loss_z1_weight and loss_z1_unweight in scANVI
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3
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635
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November 25, 2025
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Inquiry Regarding DRVI Model Compatibility with scANVI for Embedding Optimization?
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1
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103
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November 25, 2025
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Spatialdata.aggregate, image and segmentation_mask have different shape, but aligned in 'global'
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4
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204
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November 21, 2025
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.raw. car_names reassignation
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2
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83
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November 20, 2025
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Sc.tl.ingest over representing rare cell types in spatial transcriptomics data
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0
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102
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November 18, 2025
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Training not using the full GPU
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3
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163
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November 10, 2025
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Impact of scaling on clustering results and controlling minimum cluster size in Leiden clustering
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1
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242
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November 10, 2025
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How should I process the data after removing low-quality cell clusters?
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0
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114
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November 9, 2025
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How to use totalVI denoised protein measurements
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1
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100
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November 9, 2025
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Rank_genes_groups expects log data but default to adata.raw, why?
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0
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181
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November 7, 2025
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Convert Scanpy (h5ad) to Seurat (rds)
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10
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18934
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November 6, 2025
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Question about get_normalized_expression computation
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3
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207
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November 5, 2025
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Batch key and categorical variables for get_normalized_expression()
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2
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208
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November 4, 2025
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