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Trouble with scvi environment from reticulate in R to run seurat pipeline
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1
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165
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February 16, 2024
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How to compute the integration metrics
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1
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72
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February 16, 2024
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Error when training model on M3 Max MPS
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5
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525
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February 16, 2024
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Batch correction using scvI on multiple datasets + hyperparameter tuning of an scvI model
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1
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118
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February 16, 2024
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Running totalVI by batch
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1
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79
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February 16, 2024
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Cannot modify AnnData object
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2
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202
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February 16, 2024
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ModuleNotFoundErrror: no module named "importlib.metadata"
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4
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588
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February 15, 2024
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Saving scCODA proportion data to a csv in Pertpy
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1
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71
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February 15, 2024
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Differences between .X, .raw.X, and .raw in anndata object
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5
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3220
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February 13, 2024
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Error with cyclone ['DataFrame' object has no attribute 'iteritems' ]
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0
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95
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February 12, 2024
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Failure to remove a batch_key/ effect of number of LVs
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6
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173
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February 9, 2024
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Scvi and subtyping
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1
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145
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February 9, 2024
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SCVI tools with large datasets
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2
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208
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February 9, 2024
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Using my own datasets with spatialData
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9
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87
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February 8, 2024
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Subsetting/Re-normalization issue
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0
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105
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February 5, 2024
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Computing neighbors from X_scANVI representation
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0
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101
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February 4, 2024
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How to save intermediate checkpoints?
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3
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289
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February 3, 2024
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Using a model with categorical_covariate_key instead of batch_key
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2
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174
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February 1, 2024
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Plots shifted when using scanpy in R markdown
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0
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53
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February 1, 2024
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AttributeError: module 'jax' has no attribute 'Device'
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9
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3316
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January 31, 2024
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How to compare different parameter sets using the validation loss?
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3
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159
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January 31, 2024
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GIMVI, label specification for single cell and spatial data
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0
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97
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January 28, 2024
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Preparing data for training of a classifier while preserving biological signal
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0
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91
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January 27, 2024
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TCR Metrics for Pairwise Distance Matrix
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3
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107
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January 26, 2024
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Clonotype_network
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2
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88
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January 26, 2024
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Bus error when writing concatenated adata
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1
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98
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January 26, 2024
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Trying to read custom genome using sc.read_10x_h5
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0
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97
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January 26, 2024
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Multi_chain and extra_chains
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1
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51
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January 26, 2024
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Var counts 0 after gene filtering
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1
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100
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January 25, 2024
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Label Transfer Discrepancy in scANVI Model Training
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2
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133
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January 22, 2024
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