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Question about interpreting the DEGs associated with disease changes using MrVI
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2
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45
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February 11, 2025
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Ablating latent variables in LinearSCVI
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3
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35
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February 6, 2025
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Weird output combat integration two datasets
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2
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31
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February 6, 2025
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TotalVI not fully integrating CITEseq cells with GEX and missing protein values
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1
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25
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February 6, 2025
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How to deal with negative logfoldchange in dotplot
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0
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27
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February 6, 2025
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Lazy loading of Zarr from S3
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3
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49
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January 30, 2025
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Differential gene expression shows very low raw_means
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2
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33
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January 30, 2025
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The mean of the the scVI ZINB model distribution (related to supplementary note 3)
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4
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40
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January 29, 2025
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Tensor nan error when training scANVI model
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6
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727
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January 29, 2025
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How to appropriately transfer annotations from anndata to seurat
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2
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113
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January 24, 2025
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Best practice for handling custom points during SCVI training
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4
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60
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January 24, 2025
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Integrating TRUST4 outputs into anndata GEX
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3
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35
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January 22, 2025
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Cell hashing analysis using muon
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0
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26
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January 21, 2025
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Workflow to integrate dataset from two different species
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1
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86
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January 21, 2025
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Scvi embedding from Census API by CellxGene
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1
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28
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January 20, 2025
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Cropping spatialdata to extent of shapes
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2
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44
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January 20, 2025
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How to convert R matrix to anndata
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4
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68
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January 17, 2025
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Using squidpy following scRNAseq and spatialRNASeq integration with scanorama and scanpy
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0
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18
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January 17, 2025
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Model cannot be initialized and return error
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6
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57
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January 15, 2025
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Error loading someone else's SCVI model: no such file (attr.pkl)
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1
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27
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January 13, 2025
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Impact of batch on TotalVI results
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1
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63
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January 5, 2025
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Differential expression analysis
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4
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696
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January 5, 2025
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Napari_spatialdata colouring cell_labels and plotting specific transcripts
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3
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196
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December 28, 2024
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What training datasets are used in the scVI pretrained model (version 2024-07-01)?
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2
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52
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December 23, 2024
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Issue with model.train() in scVI - Training Stuck at 0%
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1
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73
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December 15, 2024
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Replicating data analysis using published pipeline
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0
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30
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December 10, 2024
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Train scVI on a sampled dataset
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8
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100
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December 6, 2024
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Psutil error when running sc.neighbors() in tutorial notebook
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0
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23
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December 5, 2024
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Error loading previously saved scVI model after updating packages / cloud environment
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6
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482
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December 5, 2024
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CUDA is available but Training scVI models is too slow
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4
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96
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December 4, 2024
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