|
Same scVI model with different values on mac silicon and linux?!
|
|
1
|
101
|
November 4, 2025
|
|
Question about implementation of highly_variable_genes
|
|
0
|
84
|
November 3, 2025
|
|
Calculate gene signature scores from cell2location-deconvolved spatial transcriptomics
|
|
0
|
49
|
October 22, 2025
|
|
Pathway quantification with decoupler - questions on the possible inputs
|
|
3
|
274
|
October 22, 2025
|
|
Excluding Ig and ribosomal genes from HVG selection in scVI, best practice?
|
|
1
|
264
|
October 22, 2025
|
|
Potential bug in scvi.model.TOTALVI.setup_mudata
|
|
2
|
89
|
October 10, 2025
|
|
Changing the order of the anndata objects in anndata.concat changes the leiden clustering
|
|
6
|
294
|
October 9, 2025
|
|
Infercnvpy | get positional information for bins
|
|
0
|
64
|
October 7, 2025
|
|
Help with package setup
|
|
2
|
91
|
October 7, 2025
|
|
How to use scib benchmark-metrics evaluate the adata after BBKNN integretion
|
|
3
|
261
|
October 7, 2025
|
|
Is Gaussian mixture VAE implemented in scVI-tools?
|
|
3
|
155
|
September 25, 2025
|
|
Anchor-based integration methods
|
|
1
|
113
|
September 25, 2025
|
|
Posterior probability interpretability (soft=True)
|
|
1
|
130
|
September 25, 2025
|
|
Cell charter niche calling
|
|
5
|
476
|
September 13, 2025
|
|
Preprocess of scATAC use for peakVI or MultiVII
|
|
0
|
60
|
September 12, 2025
|
|
Preprocess of scATAC use for peakVI or MultiVI
|
|
5
|
292
|
September 3, 2025
|
|
Memory Usage in multiple New Formats
|
|
2
|
280
|
September 2, 2025
|
|
How can I operate on view of Anndata object when the Object itself is large to load to memory?
|
|
1
|
194
|
September 2, 2025
|
|
Error ir.tl.summarize_clonal_expansion
|
|
2
|
64
|
September 2, 2025
|
|
multiVI speed and cpu consumption
|
|
2
|
125
|
August 30, 2025
|
|
Get_normalized_expression causes my kernel to disconnect
|
|
1
|
117
|
August 19, 2025
|
|
Decoupler error: raw input data has integers, will not accept "skip_checks=True"
|
|
1
|
104
|
August 19, 2025
|
|
SpatialData workflow
|
|
3
|
203
|
August 12, 2025
|
|
How to Correct for Intra-Organ Batch Effects Without Removing Inter-Organ Differences?
|
|
6
|
235
|
August 5, 2025
|
|
Can we use resolVI and squidpy to annotate a CosMX object based on a single cell reference?
|
|
1
|
204
|
August 3, 2025
|
|
Conduct SCANVI after running SysVI on multi-platform data
|
|
3
|
119
|
August 3, 2025
|
|
How to filter out specific cell types in spatialdata similar to anndata?
|
|
1
|
186
|
August 1, 2025
|
|
Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)
|
|
15
|
550
|
July 31, 2025
|
|
Implementing Warmup to a component based on epoch
|
|
2
|
100
|
July 31, 2025
|
|
RESOLVI - continuous_covariate_keys
|
|
0
|
101
|
July 24, 2025
|