|
`ir.tl.chain_qc(adata)` error message with scirpy 0.18.0
|
|
3
|
21
|
October 17, 2024
|
|
Transferring lables from refrence dataset to query dataset with a more diverse cell population using scANVI
|
|
8
|
119
|
October 17, 2024
|
|
SCANVI inferred cell types don't make sense
|
|
1
|
77
|
October 17, 2024
|
|
Using low precision matrix multiplication to boost performance
|
|
6
|
210
|
October 17, 2024
|
|
Model Training got only 2 epochs
|
|
4
|
136
|
October 14, 2024
|
|
Trouble integrating my dataset into a reference dataset
|
|
16
|
242
|
October 11, 2024
|
|
Cluster boundary identification
|
|
0
|
13
|
October 10, 2024
|
|
Error reading HDF5 file in MuData/AnnData
|
|
2
|
56
|
October 6, 2024
|
|
Is it possible to add extra covariate categories to a trained SCVI model?
|
|
3
|
69
|
October 4, 2024
|
|
Scanpy.pl.rank_genes_groups_dotplot doesn't plot gene symbols in adata.var_names
|
|
0
|
105
|
September 30, 2024
|
|
Convert Scanpy (h5ad) to Seurat (rds)
|
|
9
|
14663
|
September 27, 2024
|
|
Error in MrVI differential abundance
|
|
1
|
41
|
September 27, 2024
|
|
How can I process anndata using multiprocessing?
|
|
2
|
80
|
September 27, 2024
|
|
Scale for predicted vs observed plot in SCVI-SCANVI mapping?
|
|
2
|
28
|
September 25, 2024
|
|
scVI with large datasets
|
|
4
|
216
|
September 24, 2024
|
|
Daf (Data in Axes in Formats)
|
|
0
|
20
|
September 24, 2024
|
|
ZeroDivisionError using scvi-tools
|
|
15
|
124
|
September 23, 2024
|
|
Embedding number for visualization
|
|
10
|
65
|
September 23, 2024
|
|
scArches with multiple covariates
|
|
9
|
732
|
September 22, 2024
|
|
Ambient RNA removal before TotalVI?
|
|
1
|
46
|
September 22, 2024
|
|
Sc.pp.regress_out() with large datasets
|
|
0
|
109
|
September 19, 2024
|
|
scVI reproducibility seed issue
|
|
4
|
826
|
September 19, 2024
|
|
Cell charter niche calling
|
|
4
|
183
|
September 19, 2024
|
|
VeloVI model formulation
|
|
0
|
27
|
September 18, 2024
|
|
SCANVI: Label transfer from in vivo reference to in vitro model?
|
|
4
|
682
|
September 15, 2024
|
|
[Usage clarification] Should the .obs in query and reference be exactly the same?
|
|
2
|
24
|
September 13, 2024
|
|
How is the scArches scvi/scanvi pipeline different from the one on SCVI tutorials?
|
|
0
|
54
|
September 13, 2024
|
|
Weird UMAP after running scVI
|
|
6
|
217
|
September 12, 2024
|
|
Trouble Making a Z-Score Heatmap
|
|
2
|
1089
|
September 11, 2024
|
|
Macbook M1 M2 mps acceleration with scVI
|
|
7
|
1477
|
September 10, 2024
|