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Importing cellcharter
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1
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82
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January 22, 2024
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Differential expression and rarely expressed genes
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1
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153
|
January 20, 2024
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Converting view of a backed anndata object into non-view/non-backed
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2
|
180
|
January 16, 2024
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Heatmap cannot be assigned as a subplot
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1
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174
|
January 16, 2024
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Umap shapes different for the same dataset
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1
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131
|
January 15, 2024
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Counts in layers is zero after ad.concat
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2
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114
|
January 15, 2024
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Encountering Error in Label Transfer : Query Dataset Slightly Larger than Reference Dataset
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3
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156
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January 11, 2024
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Sorting annData object by observations or variables?
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1
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688
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January 10, 2024
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scVI dropout, need for it?
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2
|
157
|
January 10, 2024
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Mismatch between MAST DE results and dotplot
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0
|
83
|
January 9, 2024
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Pl.dotplot : legend(mean expression in group) number is so large
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1
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249
|
January 9, 2024
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Attribute Error while training simplescvi on tutorial lung data. Differences to full scvi?
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2
|
130
|
January 9, 2024
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Adding cycle consistency loss and VampPrior to scVI
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2
|
105
|
January 9, 2024
|
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Remove samples/rows from anndata
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5
|
3581
|
January 9, 2024
|
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Any existing effort to port squidpy functionalities to R?
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0
|
109
|
January 7, 2024
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Denoising/remove ambient RNA with scAR then scvi modeling?
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3
|
195
|
January 6, 2024
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Interpretation and visualization of MrVI output?
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1
|
158
|
January 6, 2024
|
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Metadata file is empty after reading in with sp.read.vizgen
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2
|
210
|
January 2, 2024
|
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Option to plot separate umaps for concatenated datasets
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4
|
286
|
December 27, 2023
|
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Weird oval umap cluster
|
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0
|
129
|
December 25, 2023
|
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Sc.pp.highly_variable_genes with batch_key causes segmentation fault
|
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0
|
107
|
December 24, 2023
|
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Clustering on the scVI latent space generates only gray-colored cells
|
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4
|
160
|
December 24, 2023
|
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Scpoli use guidance
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0
|
122
|
December 21, 2023
|
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Kernel dies when training simple SCVI on mac m3
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1
|
164
|
December 20, 2023
|
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How to use normalised expression
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|
0
|
186
|
December 19, 2023
|
|
MultiVI error on only paired data
|
|
3
|
316
|
December 19, 2023
|
|
Measure cluster colocalizations in spatialRNAseq with scRNAseq clusters
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1
|
105
|
December 13, 2023
|
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Predicting of unassigned cells using scANVI
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0
|
157
|
December 10, 2023
|
|
Error running ModelTuner.fit
|
|
5
|
365
|
December 8, 2023
|
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Convert Scanpy (h5ad) to Seurat (rds)
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|
7
|
7161
|
December 6, 2023
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