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Loosing anndata .var layer when using sc.concat?
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3
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1072
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September 9, 2024
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CNV scores in infercnvpy
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0
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54
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September 6, 2024
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How to assess scanvi annoation transfer effect
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1
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31
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September 6, 2024
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Changing color/size of textfont with sc.pl.umap
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2
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290
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September 4, 2024
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What to do when the query dataset has different genes from the reference?
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4
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62
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September 4, 2024
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Anndata.concat([a,b], join="inner") does not behave as a.concat(b)
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1
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139
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September 4, 2024
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IndexError: list index out of range when running `sc.pp.neighbors(adata)`
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4
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26
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September 3, 2024
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How to extract transformed polygons from sdata.shapes?
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3
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49
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September 2, 2024
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ImportError: to_polygons
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0
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5
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September 1, 2024
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Can I use the package scib-metrics on methods that don't output an embedding?
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6
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333
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August 31, 2024
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Autotune on custom model class
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4
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53
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August 30, 2024
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Doublet removal: solo model train error
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13
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98
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August 29, 2024
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Understanding `differential_expression()` and lvm-DE
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3
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66
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August 28, 2024
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Pre-defined validation data
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1
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25
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August 27, 2024
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How to compare different parameter sets using the validation loss?
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6
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663
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August 26, 2024
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Key error: 'coords'
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0
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15
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August 26, 2024
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SCVI and SCANVI for label transfer how to assess accuracy?
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3
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147
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August 20, 2024
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Error when using scVI.model.train
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2
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126
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August 19, 2024
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Understanding the behaviour of sc.pp.highly_variable_genes with a batch_key and different values of n_top_genes
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1
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124
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August 15, 2024
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Mappingproxy is not defined - spatialdata-io
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1
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10
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August 12, 2024
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Scvi - denoising single-cell/single-nucleus transcription data
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3
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214
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August 8, 2024
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scVI integration set batch_key and poor Umap result
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3
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171
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August 7, 2024
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Read failure with aligned example data; fails on "shapes"
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2
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26
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August 7, 2024
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Is the output of `get_normalized_expression` batch-corrected or not?
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2
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189
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August 5, 2024
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Filtering out a subset of genes in adata
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3
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540
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July 31, 2024
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MrVI input and interpretation
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23
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1173
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July 31, 2024
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Sc.pl.umap scales
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1
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89
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July 30, 2024
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P-values for scanpy.tl.rank_genes_groups
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1
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133
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July 30, 2024
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Stannotation with scanpy and seaborn
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0
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41
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July 30, 2024
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Benchmarking with scib-metrics: Graph Connectivity as a batch correction metric
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5
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105
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July 25, 2024
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