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Cannot load filtered_contig_annotations.csv
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6
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421
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March 3, 2025
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Issue with retrain scANVI model
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1
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160
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March 3, 2025
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Issue with scVI model device
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2
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126
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March 3, 2025
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In which direction is the LCF calculated when using the function differential_expression?
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1
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103
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March 2, 2025
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Rank_genes_groups pts and DE
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0
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461
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February 27, 2025
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Scanpy.rank_genes_groups after pp.regress_out
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0
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137
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February 27, 2025
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GIMVI genes imputation
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1
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231
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February 26, 2025
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Import annadata failed: Intel oneMKL FATAL ERROR: Cannot load mkl_intel_thread.2.dll
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1
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1025
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February 26, 2025
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Function in scanvi that can help compute the probability of having a latent cell state given a cell type
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1
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124
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February 26, 2025
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Set of guidelines for SCVI and VisiumHD data
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0
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231
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February 25, 2025
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Reg negative and positive TF activity values
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0
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82
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February 24, 2025
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Differential Expression and Batch Correction
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1
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404
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February 20, 2025
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SOLO/scVI .train() error related to batch_size?
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6
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1541
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February 20, 2025
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scVelo between conditions
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0
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83
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February 20, 2025
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Really hard to plot categories palette
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1
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168
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February 14, 2025
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Help with harmony and scanpy
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3
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1348
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February 14, 2025
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I have always had a question: do I need to scale my adata before running sc.tl.score_genes?
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4
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1605
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February 14, 2025
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Pertpy: AttributeError: module 'pertpy.plot' has no attribute 'coda'
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5
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800
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February 14, 2025
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Dealing with multiple samples
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9
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1370
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February 13, 2025
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Question about interpreting the DEGs associated with disease changes using MrVI
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2
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196
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February 11, 2025
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Weird output combat integration two datasets
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2
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149
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February 6, 2025
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TotalVI not fully integrating CITEseq cells with GEX and missing protein values
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1
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144
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February 6, 2025
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How to deal with negative logfoldchange in dotplot
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0
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107
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February 6, 2025
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Lazy loading of Zarr from S3
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3
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314
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January 30, 2025
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Differential gene expression shows very low raw_means
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2
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142
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January 30, 2025
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The mean of the the scVI ZINB model distribution (related to supplementary note 3)
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4
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222
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January 29, 2025
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Tensor nan error when training scANVI model
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6
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986
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January 29, 2025
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How to appropriately transfer annotations from anndata to seurat
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2
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502
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January 24, 2025
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Best practice for handling custom points during SCVI training
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4
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163
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January 24, 2025
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Integrating TRUST4 outputs into anndata GEX
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3
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232
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January 22, 2025
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