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WNN neighborhood graph construction failing
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1
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205
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July 23, 2024
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How can I load an anndata object when 'raw' was saved as a dictionary
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1
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85
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July 23, 2024
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How to subset anndata variables, but still store the removed variables elsewhere for downstream analysis?
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1
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106
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July 23, 2024
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Do I need to scale my adata before running sc.tl.score_genes?
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2
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156
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July 23, 2024
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Some default parameter annotations in API are confusing
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2
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52
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July 23, 2024
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Batch correction on different conditions
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1
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36
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July 23, 2024
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AdversarialTrainingPlan in _trainingplans.py
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1
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17
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July 23, 2024
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Different UMAPs for same dataset with scANVI
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6
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125
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July 22, 2024
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Differences in library sizes between reference and query
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3
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72
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July 22, 2024
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Integration with multiple categorical variable
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1
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23
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July 22, 2024
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Function 'sexp_as_cholmod_sparse' not provided by package 'Matrix'
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4
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403
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July 21, 2024
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MrVI min cells per sample, cross tissue samples
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1
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45
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July 20, 2024
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Multithreading error
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1
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238
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July 16, 2024
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Error with DefaultAssay in R when Integrating Data Using scvi-tools
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4
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134
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July 16, 2024
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Scanpy.tl.rank_genes_groups with wilcoxon returns same score for multiple genes
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0
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212
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July 15, 2024
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Error when trying to use scvi.model.SCANVI.from_scvi_model
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2
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195
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July 12, 2024
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TypeError with ir.tl.define_clonotype_clusters
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3
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34
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July 9, 2024
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Any suggestions for speeding up model training (vae and solo) on M2 mac
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1
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237
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July 8, 2024
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Recommendation for transform_batch / categorical_covariate_keys to obtain "batch corrected" counts
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1
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161
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July 3, 2024
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[moved] How to align image to cropped data, visualize with Xenium Explorer
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1
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126
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July 2, 2024
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N_samples ( refers to Monte Carlo sampling for each cell) setting in totalVI
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1
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65
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June 28, 2024
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Failing to import SCVI-tools modules: has AnnDatasetFromAnnData been replaced?
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2
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58
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June 27, 2024
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Spatial resolution artifacts outside of detected tissue
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8
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113
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June 24, 2024
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Error in py_call_impl(callable, call_args$unnamed, call_args$named)
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0
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267
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June 24, 2024
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Spatialdata wrong shapes translation
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8
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110
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June 21, 2024
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Akoya Pheno/CODEX data
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5
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920
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June 21, 2024
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Cellranger_aggr data
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1
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66
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June 19, 2024
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The output of scANVI
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2
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146
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June 19, 2024
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Differential expression with scvi - batch correction?
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1
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258
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June 19, 2024
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Stitching CoxMx data fovs
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0
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82
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June 18, 2024
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