Pertpy works fine if install with
pip install pertpy
However when installed from github
gh repo clone theislab/pertpy
cd pertpy
pip install .
When running pertpy.pl.coda.boxplots(), I keep encountering the following error
AttributeError: module 'pertpy.plot' has no attribute 'coda'
The installed packages are as follows
scanpy==1.9.5 anndata==0.10.2 umap==0.5.4 numpy==1.24.4 scipy==1.11.3 pandas==2.1.2 scikit-learn==1.3.2 statsmodels==0.14.0 igraph==0.10.8 pynndescent==0.5.10
The errors occur both in apple silicon macos sonoma and intel linux platform.
The only available plot modules are
Is this because some packages are in conflict? How can I solve this problem?