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scvi.model.SCVI for DE gene anlaysis
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1
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112
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May 8, 2022
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Negative binomial regression on numerical variables
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0
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60
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May 3, 2022
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Semi supervised integration update
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2
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67
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May 3, 2022
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What was the basis for parameter choices in tutorials?
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1
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118
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April 29, 2022
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TotalVI- ADT filtering and zero value markers
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0
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72
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April 26, 2022
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Unbalanced cell types and transform_batch
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3
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110
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April 22, 2022
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SCANVI: Label transfer from in vivo reference to in vitro model?
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2
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89
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April 21, 2022
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Creating an atlas for online updating / architectural surgury using scANVI and partially labelled data
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1
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71
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April 14, 2022
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Time point specific batch correction
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5
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106
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April 3, 2022
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All genes or highly variable genes?
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10
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259
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March 31, 2022
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SCVI hyperparameter optimization
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1
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113
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March 28, 2022
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Loss_z1_weight and loss_z1_unweight in scANVI
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1
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89
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March 23, 2022
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Sizes of tensors must match when reference mapping with SCANVI
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1
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101
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March 23, 2022
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Understanding scvi.module.VAEC
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3
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129
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March 22, 2022
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Resume training from model checkpoints
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1
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78
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March 18, 2022
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Loading external CITE-seq anndata with argument `mask_protein_batches`?
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1
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82
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March 11, 2022
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Train + Prediction Split
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6
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120
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March 7, 2022
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HVGs and model fit
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4
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189
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March 6, 2022
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Batch Integration Parameter Tuning
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1
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137
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March 2, 2022
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Overriding functions from submodule
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5
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83
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March 2, 2022
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How to formulate priors and model for the cell cycle in SCVI/Pyro?
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2
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122
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March 2, 2022
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Docker Image scVI
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1
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91
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March 1, 2022
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Labels_key not available for scvi.model.MULTIVI.setup_anndata()
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3
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99
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March 1, 2022
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Usage of HVG in scVI
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12
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384
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March 1, 2022
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Protocol for model optimization (currently focused on MultiVI)
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2
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94
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February 28, 2022
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Novel Model for Clustering Developmental Data (starting from scANVI)
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0
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109
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January 26, 2022
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Sampling from conditional posterior of p(x_n | z_n, s_n, l_n, and covariates)
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1
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84
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February 28, 2022
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totalVI, peakVI, multiVI with scRNA-seq and scATAC-seq data
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1
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98
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February 28, 2022
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Thoughts on a more ~realistic tutorial?
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14
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260
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February 26, 2022
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Altering scANVI's Graphical Model
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1
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81
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February 25, 2022
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