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Implementing Warmup to a component based on epoch
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2
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68
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July 31, 2025
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Error when trying to use scvi.model.SCANVI.from_scvi_model
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7
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322
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July 22, 2025
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Problems with Bayes factors and LFC changes using model.differential_expression()
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8
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286
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July 9, 2025
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Wrong log-fold change estimation?
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3
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87
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July 9, 2025
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Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression
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2
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94
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July 10, 2025
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Does MultiVI support using tile matrix directly instead of peak calling for ATAC input?
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2
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80
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July 9, 2025
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The best practice for detecting differential gene expression between 2 types of samples
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4
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1080
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July 9, 2025
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Documentation for training with multiple GPUs
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5
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417
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July 9, 2025
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Shared cell types not mixing when integrating datasets from different species
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4
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193
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June 19, 2025
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SMART-seq and MARS-seq pipelines
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1
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92
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June 19, 2025
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Workflow advice for totalVI in CITE-seq Multiplexed data
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3
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134
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June 19, 2025
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Domain adaptation to pre-train batch correction model using paired data
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12
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227
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May 27, 2025
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Amortized LDA Topic Modeling - picking the right number of topics
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8
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205
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June 4, 2025
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scVI batch correction clusters all cells from sample in a circle (potential artifact)
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14
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199
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June 3, 2025
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Macbook M1 M2 mps acceleration with scVI
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9
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1983
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May 30, 2025
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Help on MultiVI for data modality
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1
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241
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May 16, 2025
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Protocol for model optimization (currently focused on MultiVI)
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3
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641
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May 14, 2025
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How to interpret reconstruction loss increase but elbo loss decrease on trained scvi and scanvi models
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1
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202
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May 11, 2025
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Nan values in the latent of scanvi_query
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1
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59
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April 23, 2025
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Modify gene identifiers stored in existing scVI model
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1
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60
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April 20, 2025
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Anndata Manager Store
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11
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183
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April 20, 2025
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Scvi package can't be installed into google colab?
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6
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125
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April 20, 2025
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Is the scVI model applicable to bulk RNA-seq data from cell lines?
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1
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151
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April 16, 2025
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Understanding scVI integration inside R with Seurat v5 & SCTransform
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1
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394
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April 6, 2025
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How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)?
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8
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99
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April 10, 2025
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Suggestions for training on xenium spatial transcriptomics dataset
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5
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291
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March 22, 2025
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Error when running scvi.data.add_dna_sequence
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1
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81
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March 18, 2025
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Scvi-tools solo return synthetic doublets
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3
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85
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March 18, 2025
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SysVI model and normalized expression
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1
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157
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March 15, 2025
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Scvi-tools and xenium
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7
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717
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March 13, 2025
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