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Question about complex experiment
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1
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82
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November 25, 2025
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Loss_z1_weight and loss_z1_unweight in scANVI
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3
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526
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November 25, 2025
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Inquiry Regarding DRVI Model Compatibility with scANVI for Embedding Optimization?
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1
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55
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November 25, 2025
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Training not using the full GPU
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3
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94
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November 10, 2025
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How to use totalVI denoised protein measurements
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1
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68
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November 9, 2025
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Question about get_normalized_expression computation
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3
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126
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November 5, 2025
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Batch key and categorical variables for get_normalized_expression()
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2
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150
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November 4, 2025
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Excluding Ig and ribosomal genes from HVG selection in scVI, best practice?
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1
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159
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October 22, 2025
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Potential bug in scvi.model.TOTALVI.setup_mudata
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2
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50
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October 10, 2025
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Is Gaussian mixture VAE implemented in scVI-tools?
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3
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83
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September 25, 2025
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Preprocess of scATAC use for peakVI or MultiVI
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5
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198
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September 3, 2025
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Get_normalized_expression causes my kernel to disconnect
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1
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77
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August 19, 2025
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How to Correct for Intra-Organ Batch Effects Without Removing Inter-Organ Differences?
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6
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142
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August 5, 2025
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Conduct SCANVI after running SysVI on multi-platform data
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3
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78
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August 3, 2025
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Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)
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15
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405
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July 31, 2025
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Implementing Warmup to a component based on epoch
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2
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80
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July 31, 2025
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Error when trying to use scvi.model.SCANVI.from_scvi_model
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7
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359
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July 22, 2025
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Problems with Bayes factors and LFC changes using model.differential_expression()
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8
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314
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July 9, 2025
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Wrong log-fold change estimation?
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3
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103
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July 9, 2025
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Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression
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2
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109
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July 10, 2025
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Does MultiVI support using tile matrix directly instead of peak calling for ATAC input?
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2
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101
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July 9, 2025
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The best practice for detecting differential gene expression between 2 types of samples
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4
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1124
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July 9, 2025
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Documentation for training with multiple GPUs
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5
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460
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July 9, 2025
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Shared cell types not mixing when integrating datasets from different species
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4
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248
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June 19, 2025
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SMART-seq and MARS-seq pipelines
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1
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113
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June 19, 2025
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Workflow advice for totalVI in CITE-seq Multiplexed data
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3
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167
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June 19, 2025
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Domain adaptation to pre-train batch correction model using paired data
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12
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276
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May 27, 2025
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Amortized LDA Topic Modeling - picking the right number of topics
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8
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237
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June 4, 2025
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scVI batch correction clusters all cells from sample in a circle (potential artifact)
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14
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262
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June 3, 2025
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Help on MultiVI for data modality
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1
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257
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May 16, 2025
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