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Scvi-tools and xenium
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7
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417
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March 13, 2025
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Unexpected exception formatting exception when prepare_query_anndata
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4
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110
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March 11, 2025
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DestVI: how to load a DestVI model that was saved as a pickle
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1
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41
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March 9, 2025
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Parameters in training model for integrating datasets with scVI in R
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13
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97
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March 9, 2025
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Understanding batch-corrected counts in scVI
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6
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164
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March 9, 2025
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Add new data to existing integration
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3
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62
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March 7, 2025
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Issue with retrain scANVI model
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1
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47
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March 3, 2025
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Issue with scVI model device
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2
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41
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March 3, 2025
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In which direction is the LCF calculated when using the function differential_expression?
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1
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25
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March 2, 2025
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GIMVI genes imputation
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1
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42
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February 26, 2025
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Function in scanvi that can help compute the probability of having a latent cell state given a cell type
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1
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30
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February 26, 2025
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Set of guidelines for SCVI and VisiumHD data
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0
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60
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February 25, 2025
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Differential Expression and Batch Correction
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1
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154
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February 20, 2025
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SOLO/scVI .train() error related to batch_size?
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6
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1291
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February 20, 2025
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Question about interpreting the DEGs associated with disease changes using MrVI
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2
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62
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February 11, 2025
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Ablating latent variables in LinearSCVI
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3
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40
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February 6, 2025
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TotalVI not fully integrating CITEseq cells with GEX and missing protein values
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1
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35
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February 6, 2025
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Differential gene expression shows very low raw_means
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2
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37
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January 30, 2025
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The mean of the the scVI ZINB model distribution (related to supplementary note 3)
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4
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51
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January 29, 2025
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How to appropriately transfer annotations from anndata to seurat
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2
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168
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January 24, 2025
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Best practice for handling custom points during SCVI training
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4
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62
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January 24, 2025
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Workflow to integrate dataset from two different species
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1
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99
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January 21, 2025
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Scvi embedding from Census API by CellxGene
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1
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33
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January 20, 2025
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Model cannot be initialized and return error
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6
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64
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January 15, 2025
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Error loading someone else's SCVI model: no such file (attr.pkl)
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1
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30
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January 13, 2025
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Impact of batch on TotalVI results
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1
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67
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January 5, 2025
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Differential expression analysis
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4
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749
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January 5, 2025
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What training datasets are used in the scVI pretrained model (version 2024-07-01)?
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2
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56
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December 23, 2024
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Issue with model.train() in scVI - Training Stuck at 0%
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1
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103
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December 15, 2024
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Train scVI on a sampled dataset
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8
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118
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December 6, 2024
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