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Understanding scVI integration inside R with Seurat v5 & SCTransform
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1
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198
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April 6, 2025
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How to fix number of nodes used in HPC environment with scvi.train (via R & reticulate)?
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8
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49
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April 10, 2025
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Suggestions for training on xenium spatial transcriptomics dataset
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5
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191
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March 22, 2025
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Error when running scvi.data.add_dna_sequence
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1
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51
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March 18, 2025
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Scvi-tools solo return synthetic doublets
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3
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29
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March 18, 2025
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SysVI model and normalized expression
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1
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84
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March 15, 2025
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Scvi-tools and xenium
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7
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493
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March 13, 2025
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Unexpected exception formatting exception when prepare_query_anndata
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4
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137
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March 11, 2025
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DestVI: how to load a DestVI model that was saved as a pickle
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1
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43
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March 9, 2025
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Parameters in training model for integrating datasets with scVI in R
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13
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109
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March 9, 2025
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Understanding batch-corrected counts in scVI
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6
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245
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March 9, 2025
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Add new data to existing integration
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3
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72
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March 7, 2025
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Issue with retrain scANVI model
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1
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54
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March 3, 2025
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Issue with scVI model device
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2
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44
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March 3, 2025
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In which direction is the LCF calculated when using the function differential_expression?
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1
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28
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March 2, 2025
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GIMVI genes imputation
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1
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50
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February 26, 2025
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Function in scanvi that can help compute the probability of having a latent cell state given a cell type
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1
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30
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February 26, 2025
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Set of guidelines for SCVI and VisiumHD data
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0
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74
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February 25, 2025
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Differential Expression and Batch Correction
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1
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184
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February 20, 2025
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SOLO/scVI .train() error related to batch_size?
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6
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1320
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February 20, 2025
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Question about interpreting the DEGs associated with disease changes using MrVI
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2
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68
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February 11, 2025
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Ablating latent variables in LinearSCVI
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3
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44
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February 6, 2025
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TotalVI not fully integrating CITEseq cells with GEX and missing protein values
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1
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41
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February 6, 2025
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Differential gene expression shows very low raw_means
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2
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39
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January 30, 2025
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The mean of the the scVI ZINB model distribution (related to supplementary note 3)
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4
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57
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January 29, 2025
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How to appropriately transfer annotations from anndata to seurat
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2
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210
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January 24, 2025
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Best practice for handling custom points during SCVI training
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4
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63
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January 24, 2025
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Workflow to integrate dataset from two different species
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1
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113
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January 21, 2025
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Scvi embedding from Census API by CellxGene
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1
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35
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January 20, 2025
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Model cannot be initialized and return error
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6
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69
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January 15, 2025
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