|
Question about complex experiment
|
|
1
|
82
|
November 25, 2025
|
|
Loss_z1_weight and loss_z1_unweight in scANVI
|
|
3
|
525
|
November 25, 2025
|
|
Inquiry Regarding DRVI Model Compatibility with scANVI for Embedding Optimization?
|
|
1
|
54
|
November 25, 2025
|
|
Training not using the full GPU
|
|
3
|
94
|
November 10, 2025
|
|
How to use totalVI denoised protein measurements
|
|
1
|
68
|
November 9, 2025
|
|
Question about get_normalized_expression computation
|
|
3
|
125
|
November 5, 2025
|
|
Batch key and categorical variables for get_normalized_expression()
|
|
2
|
149
|
November 4, 2025
|
|
Excluding Ig and ribosomal genes from HVG selection in scVI, best practice?
|
|
1
|
157
|
October 22, 2025
|
|
Potential bug in scvi.model.TOTALVI.setup_mudata
|
|
2
|
50
|
October 10, 2025
|
|
Is Gaussian mixture VAE implemented in scVI-tools?
|
|
3
|
83
|
September 25, 2025
|
|
Preprocess of scATAC use for peakVI or MultiVI
|
|
5
|
198
|
September 3, 2025
|
|
Get_normalized_expression causes my kernel to disconnect
|
|
1
|
77
|
August 19, 2025
|
|
How to Correct for Intra-Organ Batch Effects Without Removing Inter-Organ Differences?
|
|
6
|
142
|
August 5, 2025
|
|
Conduct SCANVI after running SysVI on multi-platform data
|
|
3
|
78
|
August 3, 2025
|
|
Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)
|
|
15
|
404
|
July 31, 2025
|
|
Implementing Warmup to a component based on epoch
|
|
2
|
80
|
July 31, 2025
|
|
Error when trying to use scvi.model.SCANVI.from_scvi_model
|
|
7
|
358
|
July 22, 2025
|
|
Problems with Bayes factors and LFC changes using model.differential_expression()
|
|
8
|
314
|
July 9, 2025
|
|
Wrong log-fold change estimation?
|
|
3
|
102
|
July 9, 2025
|
|
Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression
|
|
2
|
109
|
July 10, 2025
|
|
Does MultiVI support using tile matrix directly instead of peak calling for ATAC input?
|
|
2
|
100
|
July 9, 2025
|
|
The best practice for detecting differential gene expression between 2 types of samples
|
|
4
|
1123
|
July 9, 2025
|
|
Documentation for training with multiple GPUs
|
|
5
|
460
|
July 9, 2025
|
|
Shared cell types not mixing when integrating datasets from different species
|
|
4
|
248
|
June 19, 2025
|
|
SMART-seq and MARS-seq pipelines
|
|
1
|
113
|
June 19, 2025
|
|
Workflow advice for totalVI in CITE-seq Multiplexed data
|
|
3
|
167
|
June 19, 2025
|
|
Domain adaptation to pre-train batch correction model using paired data
|
|
12
|
273
|
May 27, 2025
|
|
Amortized LDA Topic Modeling - picking the right number of topics
|
|
8
|
236
|
June 4, 2025
|
|
scVI batch correction clusters all cells from sample in a circle (potential artifact)
|
|
14
|
258
|
June 3, 2025
|
|
Help on MultiVI for data modality
|
|
1
|
257
|
May 16, 2025
|