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Passing cell neighbor indices to my encoder
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4
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67
|
June 29, 2022
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Pretrained models on Tabula sapiens
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4
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59
|
June 23, 2022
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|
Query data formatting to map onto a reference
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3
|
69
|
June 22, 2022
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How to extract batch-corrected expression matrix from trained scVI vae model
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5
|
278
|
June 20, 2022
|
|
DestVI Tensor Nan Error
|
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5
|
88
|
June 14, 2022
|
|
DE analysis between two batch-specific clusters
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|
8
|
174
|
June 12, 2022
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Error on scvi_model.train(100) for seed label transfer
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1
|
280
|
June 8, 2022
|
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Error when training SCVI on reference data
|
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4
|
56
|
June 4, 2022
|
|
Error in scvi.model.SCANVI.load_query_data
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2
|
40
|
June 3, 2022
|
|
Autoencoder gene expression reconstruction accuracy
|
|
1
|
81
|
June 1, 2022
|
|
Mapping old scANVI code to 0.16.2
|
|
8
|
92
|
June 1, 2022
|
|
CellAssign keyword error: After Integration
|
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3
|
73
|
May 26, 2022
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|
What model to use when integrating batches of scRNA-seq matrices containing >150,000 T and innate lymphoid cell (ILC) sub-populations
|
|
7
|
110
|
May 26, 2022
|
|
The totalVI DE test; gene names
|
|
2
|
61
|
May 24, 2022
|
|
SCANVI: Label transfer from adult to embryonic data?
|
|
1
|
69
|
May 17, 2022
|
|
Consistent results when using scvi.model.SCVI
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|
3
|
78
|
May 11, 2022
|
|
scvi.model.SCVI for DE gene anlaysis
|
|
1
|
143
|
May 8, 2022
|
|
Negative binomial regression on numerical variables
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|
0
|
73
|
May 3, 2022
|
|
Semi supervised integration update
|
|
2
|
78
|
May 3, 2022
|
|
What was the basis for parameter choices in tutorials?
|
|
1
|
132
|
April 29, 2022
|
|
TotalVI- ADT filtering and zero value markers
|
|
0
|
83
|
April 26, 2022
|
|
Unbalanced cell types and transform_batch
|
|
3
|
126
|
April 22, 2022
|
|
SCANVI: Label transfer from in vivo reference to in vitro model?
|
|
2
|
115
|
April 21, 2022
|
|
Creating an atlas for online updating / architectural surgury using scANVI and partially labelled data
|
|
1
|
80
|
April 14, 2022
|
|
Time point specific batch correction
|
|
5
|
117
|
April 3, 2022
|
|
All genes or highly variable genes?
|
|
10
|
311
|
March 31, 2022
|
|
SCVI hyperparameter optimization
|
|
1
|
125
|
March 28, 2022
|
|
Loss_z1_weight and loss_z1_unweight in scANVI
|
|
1
|
101
|
March 23, 2022
|
|
Sizes of tensors must match when reference mapping with SCANVI
|
|
1
|
160
|
March 23, 2022
|
|
Understanding scvi.module.VAEC
|
|
3
|
147
|
March 22, 2022
|