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Corrected count for resolvi
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1
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113
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November 25, 2025
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Question about complex experiment
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1
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84
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November 25, 2025
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Loss_z1_weight and loss_z1_unweight in scANVI
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3
|
530
|
November 25, 2025
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Inquiry Regarding DRVI Model Compatibility with scANVI for Embedding Optimization?
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1
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59
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November 25, 2025
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Training not using the full GPU
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3
|
97
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November 10, 2025
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How to use totalVI denoised protein measurements
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1
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70
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November 9, 2025
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Question about get_normalized_expression computation
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3
|
128
|
November 5, 2025
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Batch key and categorical variables for get_normalized_expression()
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2
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150
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November 4, 2025
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Excluding Ig and ribosomal genes from HVG selection in scVI, best practice?
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1
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160
|
October 22, 2025
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Potential bug in scvi.model.TOTALVI.setup_mudata
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2
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50
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October 10, 2025
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Is Gaussian mixture VAE implemented in scVI-tools?
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3
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85
|
September 25, 2025
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Preprocess of scATAC use for peakVI or MultiVI
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5
|
199
|
September 3, 2025
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Get_normalized_expression causes my kernel to disconnect
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1
|
78
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August 19, 2025
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How to Correct for Intra-Organ Batch Effects Without Removing Inter-Organ Differences?
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6
|
142
|
August 5, 2025
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Conduct SCANVI after running SysVI on multi-platform data
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3
|
81
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August 3, 2025
|
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Unexpected DE test results in scvi version 1.3.0 (as compared with version 1.1.2)
|
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15
|
408
|
July 31, 2025
|
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Implementing Warmup to a component based on epoch
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2
|
82
|
July 31, 2025
|
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Error when trying to use scvi.model.SCANVI.from_scvi_model
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7
|
359
|
July 22, 2025
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Problems with Bayes factors and LFC changes using model.differential_expression()
|
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8
|
315
|
July 9, 2025
|
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Wrong log-fold change estimation?
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3
|
107
|
July 9, 2025
|
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Discrepancy between raw mean/non-zero proportion and LFC with model.differential_expression
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2
|
110
|
July 10, 2025
|
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Does MultiVI support using tile matrix directly instead of peak calling for ATAC input?
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2
|
102
|
July 9, 2025
|
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The best practice for detecting differential gene expression between 2 types of samples
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4
|
1128
|
July 9, 2025
|
|
Documentation for training with multiple GPUs
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|
5
|
462
|
July 9, 2025
|
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Shared cell types not mixing when integrating datasets from different species
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4
|
250
|
June 19, 2025
|
|
SMART-seq and MARS-seq pipelines
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1
|
113
|
June 19, 2025
|
|
Workflow advice for totalVI in CITE-seq Multiplexed data
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3
|
171
|
June 19, 2025
|
|
Domain adaptation to pre-train batch correction model using paired data
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|
12
|
279
|
May 27, 2025
|
|
Amortized LDA Topic Modeling - picking the right number of topics
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|
8
|
240
|
June 4, 2025
|
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scVI batch correction clusters all cells from sample in a circle (potential artifact)
|
|
14
|
284
|
June 3, 2025
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